A C D F G H I N O P Q R S V

A

addEntityMeta(EntityMetaData) - Method in class org.molgenis.data.vcf.VcfRepositoryCollection

ALT - Static variable in class org.molgenis.data.vcf.VcfRepository

ALT_META - Static variable in class org.molgenis.data.vcf.VcfRepository

C

canImport(File, RepositoryCollection) - Method in class org.molgenis.data.vcf.importer.VcfImporterService

CHROM - Static variable in class org.molgenis.data.vcf.VcfRepository

CHROM_META - Static variable in class org.molgenis.data.vcf.VcfRepository

close() - Method in class org.molgenis.data.vcf.VcfRepository

count() - Method in class org.molgenis.data.vcf.VcfRepository

D

doImport(RepositoryCollection, DatabaseAction, String) - Method in class org.molgenis.data.vcf.importer.VcfImporterService

F

FILTER - Static variable in class org.molgenis.data.vcf.VcfRepository

G

getCapabilities() - Method in class org.molgenis.data.vcf.VcfRepository

getEntityMetaData() - Method in class org.molgenis.data.vcf.VcfRepository

getEntityNames() - Method in class org.molgenis.data.vcf.VcfRepositoryCollection

getInfoPrefix() - Static method in class org.molgenis.data.vcf.VcfRepository

Prefix to make INFO column names safe-ish.

getMustChangeEntityName() - Method in class org.molgenis.data.vcf.importer.VcfImporterService

getName() - Method in class org.molgenis.data.vcf.VcfRepositoryCollection

getOrder() - Method in class org.molgenis.data.vcf.importer.VcfImporterService

getRepository(String) - Method in class org.molgenis.data.vcf.VcfRepositoryCollection

getSupportedDatabaseActions() - Method in class org.molgenis.data.vcf.importer.VcfImporterService

getSupportedFileExtensions() - Method in class org.molgenis.data.vcf.importer.VcfImporterService

H

hasRepository(String) - Method in class org.molgenis.data.vcf.VcfRepositoryCollection

I

ID - Static variable in class org.molgenis.data.vcf.VcfRepository

importVcf(File) - Method in class org.molgenis.data.vcf.importer.VcfImporterService

INFO - Static variable in class org.molgenis.data.vcf.VcfRepository

INTERNAL_ID - Static variable in class org.molgenis.data.vcf.VcfRepository

iterator() - Method in class org.molgenis.data.vcf.VcfRepository

iterator() - Method in class org.molgenis.data.vcf.VcfRepositoryCollection

N

NAME - Static variable in class org.molgenis.data.vcf.VcfRepository

NAME - Static variable in class org.molgenis.data.vcf.VcfRepositoryCollection

O

onApplicationEvent(ContextRefreshedEvent) - Method in class org.molgenis.data.vcf.importer.VcfImporterServiceRegistrator

org.molgenis.data.vcf - package org.molgenis.data.vcf

org.molgenis.data.vcf.importer - package org.molgenis.data.vcf.importer

P

POS - Static variable in class org.molgenis.data.vcf.VcfRepository

POS_META - Static variable in class org.molgenis.data.vcf.VcfRepository

PREFIX - Static variable in class org.molgenis.data.vcf.VcfRepository

Q

QUAL - Static variable in class org.molgenis.data.vcf.VcfRepository

R

REF - Static variable in class org.molgenis.data.vcf.VcfRepository

REF_META - Static variable in class org.molgenis.data.vcf.VcfRepository

registerVcfRepositorySource() - Method in class org.molgenis.data.vcf.VcfDataConfig

Registers the VcfRepositorySource factory so it can be used by DataService.createFileRepositorySource(File file);

S

SAMPLES - Static variable in class org.molgenis.data.vcf.VcfRepository

V

validateImport(File, RepositoryCollection) - Method in class org.molgenis.data.vcf.importer.VcfImporterService

VcfDataConfig - Class in org.molgenis.data.vcf

VcfDataConfig() - Constructor for class org.molgenis.data.vcf.VcfDataConfig

VcfImporterService - Class in org.molgenis.data.vcf.importer

VcfImporterService(FileRepositoryCollectionFactory, DataService, PermissionSystemService) - Constructor for class org.molgenis.data.vcf.importer.VcfImporterService

VcfImporterServiceRegistrator - Class in org.molgenis.data.vcf.importer

VcfImporterServiceRegistrator(VcfImporterService, ImportServiceFactory) - Constructor for class org.molgenis.data.vcf.importer.VcfImporterServiceRegistrator

VcfRepository - Class in org.molgenis.data.vcf

Repository implementation for vcf files.

VcfRepository(File, String) - Constructor for class org.molgenis.data.vcf.VcfRepository

VcfRepositoryCollection - Class in org.molgenis.data.vcf

VcfRepositoryCollection(File) - Constructor for class org.molgenis.data.vcf.VcfRepositoryCollection

A C D F G H I N O P Q R S V