org.molgenis.data.vcf.importer

Class VcfImporterService

java.lang.Object

org.molgenis.data.vcf.importer.VcfImporterService

All Implemented Interfaces:

ImportService, org.springframework.core.Ordered

@Service
public class VcfImporterService
extends Object
implements ImportService

Field Summary

Fields inherited from interface org.springframework.core.Ordered

HIGHEST_PRECEDENCE, LOWEST_PRECEDENCE

Constructor Summary

Constructors

Constructor and Description
VcfImporterService(DataService dataService, PermissionSystemService permissionSystemService, MetaDataService metaDataService)

Method Summary

Modifier and Type	Method and Description
boolean	canImport(File file, RepositoryCollection source)
LinkedHashMap<String,Boolean>	determineImportableEntities(MetaDataService metaDataService, RepositoryCollection repositoryCollection, String defaultPackage)
EntityImportReport	doImport(RepositoryCollection source, DatabaseAction databaseAction, String defaultPackage)
boolean	getMustChangeEntityName()
int	getOrder()
List<DatabaseAction>	getSupportedDatabaseActions()
Set<String>	getSupportedFileExtensions()
EntitiesValidationReport	validateImport(File file, RepositoryCollection source)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VcfImporterService

@Autowired
public VcfImporterService(DataService dataService,
                                     PermissionSystemService permissionSystemService,
                                     MetaDataService metaDataService)

Method Detail

doImport

@Transactional
public EntityImportReport doImport(RepositoryCollection source,
                                                  DatabaseAction databaseAction,
                                                  String defaultPackage)

Specified by:

doImport in interface ImportService

validateImport

public EntitiesValidationReport validateImport(File file,
                                               RepositoryCollection source)

Specified by:

validateImport in interface ImportService

canImport

public boolean canImport(File file,
                         RepositoryCollection source)

Specified by:

canImport in interface ImportService

getOrder

public int getOrder()

Specified by:

getOrder in interface org.springframework.core.Ordered

getSupportedDatabaseActions

public List<DatabaseAction> getSupportedDatabaseActions()

Specified by:

getSupportedDatabaseActions in interface ImportService

getMustChangeEntityName

public boolean getMustChangeEntityName()

Specified by:

getMustChangeEntityName in interface ImportService

getSupportedFileExtensions

public Set<String> getSupportedFileExtensions()

Specified by:

getSupportedFileExtensions in interface ImportService

determineImportableEntities

public LinkedHashMap<String,Boolean> determineImportableEntities(MetaDataService metaDataService,
                                                                 RepositoryCollection repositoryCollection,
                                                                 String defaultPackage)

Specified by:

determineImportableEntities in interface ImportService