org.molgenis.data.vcf

Class VcfRepositoryCollection

java.lang.Object

org.molgenis.data.support.AbstractRepositoryCollection

org.molgenis.data.support.FileRepositoryCollection

org.molgenis.data.vcf.VcfRepositoryCollection

All Implemented Interfaces:

Iterable<Repository<Entity>>, RepositoryCollection

public class VcfRepositoryCollection
extends FileRepositoryCollection

Field Summary

Fields

Modifier and Type	Field and Description
static String	NAME

Fields inherited from class org.molgenis.data.support.FileRepositoryCollection

cellProcessors

Constructor Summary

Constructors

Constructor and Description
VcfRepositoryCollection(File file)

Method Summary

Modifier and Type	Method and Description
Iterable<String>	getEntityTypeIds()
String	getName()
Repository<Entity>	getRepository(String name)
boolean	hasRepository(EntityType entityType)
boolean	hasRepository(String name)
void	init()
Iterator<Repository<Entity>>	iterator()

Methods inherited from class org.molgenis.data.support.FileRepositoryCollection

addCellProcessor, getFileNameExtensions

Methods inherited from class org.molgenis.data.support.AbstractRepositoryCollection

addAttribute, createRepository, deleteAttribute, deleteRepository, getCapabilities, getRepository, updateAttribute, updateRepository

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.molgenis.data.RepositoryCollection

stream

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Field Detail

NAME

public static final String NAME

See Also:

Constant Field Values

Constructor Detail

VcfRepositoryCollection

public VcfRepositoryCollection(File file)
                        throws IOException

Throws:

IOException

Method Detail

init

public void init()
          throws IOException

Specified by:

init in class FileRepositoryCollection

Throws:

IOException

getEntityTypeIds

public Iterable<String> getEntityTypeIds()

getRepository

public Repository<Entity> getRepository(String name)

getName

public String getName()

iterator

public Iterator<Repository<Entity>> iterator()

hasRepository

public boolean hasRepository(String name)

hasRepository

public boolean hasRepository(EntityType entityType)