org.molgenis.data.vcf.importer

Class VcfImporterService

java.lang.Object

org.molgenis.data.vcf.importer.VcfImporterService

All Implemented Interfaces:

ImportService, org.springframework.core.Ordered

@Service
public class VcfImporterService
extends Object
implements ImportService

Field Summary

Fields inherited from interface org.springframework.core.Ordered

HIGHEST_PRECEDENCE, LOWEST_PRECEDENCE

Constructor Summary

Constructors

Constructor and Description
VcfImporterService(DataService dataService, org.molgenis.data.security.permission.PermissionSystemService permissionSystemService, MetaDataService metaDataService)

Method Summary

Modifier and Type	Method and Description
boolean	canImport(File file, RepositoryCollection source)
Map<String,Boolean>	determineImportableEntities(MetaDataService metaDataService, RepositoryCollection repositoryCollection, String defaultPackage)
EntityImportReport	doImport(RepositoryCollection source, MetadataAction metadataAction, DataAction dataAction, String packageId)
boolean	getMustChangeEntityName()
int	getOrder()
List<DataAction>	getSupportedDataActions()
Set<String>	getSupportedFileExtensions()
List<MetadataAction>	getSupportedMetadataActions()
EntitiesValidationReport	validateImport(File file, RepositoryCollection source)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VcfImporterService

public VcfImporterService(DataService dataService,
                          org.molgenis.data.security.permission.PermissionSystemService permissionSystemService,
                          MetaDataService metaDataService)

Method Detail

doImport

@Transactional
public EntityImportReport doImport(RepositoryCollection source,
                                                  MetadataAction metadataAction,
                                                  DataAction dataAction,
                                                  @Nullable
                                                  String packageId)

Specified by:

doImport in interface ImportService

validateImport

public EntitiesValidationReport validateImport(File file,
                                               RepositoryCollection source)

Specified by:

validateImport in interface ImportService

canImport

public boolean canImport(File file,
                         RepositoryCollection source)

Specified by:

canImport in interface ImportService

getOrder

public int getOrder()

Specified by:

getOrder in interface org.springframework.core.Ordered

getSupportedMetadataActions

public List<MetadataAction> getSupportedMetadataActions()

Specified by:

getSupportedMetadataActions in interface ImportService

getSupportedDataActions

public List<DataAction> getSupportedDataActions()

Specified by:

getSupportedDataActions in interface ImportService

getMustChangeEntityName

public boolean getMustChangeEntityName()

Specified by:

getMustChangeEntityName in interface ImportService

getSupportedFileExtensions

public Set<String> getSupportedFileExtensions()

Specified by:

getSupportedFileExtensions in interface ImportService

determineImportableEntities

public Map<String,Boolean> determineImportableEntities(MetaDataService metaDataService,
                                                       RepositoryCollection repositoryCollection,
                                                       String defaultPackage)

Specified by:

determineImportableEntities in interface ImportService