Package org.molgenis.data.vcf.model

Class VcfAttributes

java.lang.Object

org.molgenis.data.vcf.model.VcfAttributes

@Component
public class VcfAttributes
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	ALT
static java.lang.String	CHROM
static java.lang.String	FILTER
static java.lang.String	FORMAT_GT
static java.lang.String	ID
static java.lang.String	INFO
static java.lang.String	INTERNAL_ID
static java.lang.String	POS
static java.lang.String	QUAL
static java.lang.String	REF
static java.lang.String	SAMPLES

Constructor Summary

Constructors

Constructor	Description
VcfAttributes(org.molgenis.data.meta.model.AttributeFactory attributeFactory)

Method Summary

Modifier and Type	Method	Description
org.molgenis.data.meta.model.Attribute	getAltAttribute()
org.molgenis.data.meta.model.Attribute	getChromAttribute()
org.molgenis.data.meta.model.Attribute	getFilterAttribute()
org.molgenis.data.meta.model.Attribute	getIdAttribute()
org.molgenis.data.meta.model.Attribute	getPosAttribute()
org.molgenis.data.meta.model.Attribute	getQualAttribute()
org.molgenis.data.meta.model.Attribute	getRefAttribute()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CHROM

public static final java.lang.String CHROM

See Also:

Constant Field Values

ALT

public static final java.lang.String ALT

See Also:

Constant Field Values

POS

public static final java.lang.String POS

See Also:

Constant Field Values

REF

public static final java.lang.String REF

See Also:

Constant Field Values

FILTER

public static final java.lang.String FILTER

See Also:

Constant Field Values

QUAL

public static final java.lang.String QUAL

See Also:

Constant Field Values

ID

public static final java.lang.String ID

See Also:

Constant Field Values

INTERNAL_ID

public static final java.lang.String INTERNAL_ID

See Also:

Constant Field Values

INFO

public static final java.lang.String INFO

See Also:

Constant Field Values

FORMAT_GT

public static final java.lang.String FORMAT_GT

See Also:

Constant Field Values

SAMPLES

public static final java.lang.String SAMPLES

See Also:

Constant Field Values

Constructor Detail

VcfAttributes

public VcfAttributes(org.molgenis.data.meta.model.AttributeFactory attributeFactory)

Method Detail

getChromAttribute

public org.molgenis.data.meta.model.Attribute getChromAttribute()

getAltAttribute

public org.molgenis.data.meta.model.Attribute getAltAttribute()

getPosAttribute

public org.molgenis.data.meta.model.Attribute getPosAttribute()

getRefAttribute

public org.molgenis.data.meta.model.Attribute getRefAttribute()

getFilterAttribute

public org.molgenis.data.meta.model.Attribute getFilterAttribute()

getQualAttribute

public org.molgenis.data.meta.model.Attribute getQualAttribute()

getIdAttribute

public org.molgenis.data.meta.model.Attribute getIdAttribute()