Package org.molgenis.data.vcf.utils

Class VcfUtils

  • public class VcfUtils
extends java.lang.Object

    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static java.lang.String createId​(org.molgenis.data.Entity vcfEntity)
      Creates a internal molgenis id from a vcf entity
      static java.util.List<org.molgenis.data.meta.model.Attribute> getAtomicAttributesFromList​(java.lang.Iterable<org.molgenis.data.meta.model.Attribute> outputAttrs)  
      static java.util.Map<java.lang.String,​org.molgenis.data.meta.model.Attribute> getAttributesMapFromList​(java.lang.Iterable<org.molgenis.data.meta.model.Attribute> outputAttrs)  
      static java.lang.String getIdFromInfoField​(java.lang.String line)  
      protected static java.lang.String toVcfDataType​(org.molgenis.data.meta.AttributeType dataType)  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Method Detail

      • createId

        public static java.lang.String createId​(org.molgenis.data.Entity vcfEntity)
        Creates a internal molgenis id from a vcf entity
        Returns:
        the id

      • getIdFromInfoField

        public static java.lang.String getIdFromInfoField​(java.lang.String line)

      • getAtomicAttributesFromList

        public static java.util.List<org.molgenis.data.meta.model.Attribute> getAtomicAttributesFromList​(java.lang.Iterable<org.molgenis.data.meta.model.Attribute> outputAttrs)

      • getAttributesMapFromList

        public static java.util.Map<java.lang.String,​org.molgenis.data.meta.model.Attribute> getAttributesMapFromList​(java.lang.Iterable<org.molgenis.data.meta.model.Attribute> outputAttrs)

      • toVcfDataType

        protected static java.lang.String toVcfDataType​(org.molgenis.data.meta.AttributeType dataType)