org.molgenis.dataexplorer.controller

Class DataExplorerController

java.lang.Object

org.molgenis.ui.MolgenisPluginController

org.molgenis.dataexplorer.controller.DataExplorerController

@Controller
 @RequestMapping(value="/plugin/dataexplorer")
 @SessionAttributes(value={"galaxyUrl","galaxyApiKey"})
public class DataExplorerController
extends MolgenisPluginController

Controller class for the data explorer.

Field Summary

Fields

Modifier and Type	Field and Description
static String	ID
static String	URI

Fields inherited from class org.molgenis.ui.MolgenisPluginController

PLUGIN_URI_PREFIX

Constructor Summary

Constructors

Constructor and Description
DataExplorerController()

Method Summary

Modifier and Type	Method and Description
void	download(String dataRequestStr, javax.servlet.http.HttpServletResponse response)
void	exportToGalaxy(GalaxyDataExportRequest galaxyDataExportRequest, org.springframework.ui.Model model)
String	getModule(String moduleId, String entityName, org.springframework.ui.Model model)
ModulesConfigResponse	getModules(String entityName) Returns modules configuration for this entity based on current user permissions.
ErrorMessageResponse	handleGalaxyDataExportException(GalaxyDataExportException e)
ErrorMessageResponse	handleRuntimeException(RuntimeException e)
String	init(String selectedEntityName, org.springframework.ui.Model model) Show the explorer page
String	viewEntityDetails(String entityName, String entityId, org.springframework.ui.Model model) Builds a model containing one entity and returns the entityReport ftl view

Methods inherited from class org.molgenis.ui.MolgenisPluginController

getId, getPluginSettings, getUri

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ID

public static final String ID

See Also:

Constant Field Values

URI

public static final String URI

See Also:

Constant Field Values

Constructor Detail

DataExplorerController

public DataExplorerController()

Method Detail

init

@RequestMapping(method=GET)
public String init(@RequestParam(value="entity",required=false)
                                               String selectedEntityName,
                                               org.springframework.ui.Model model)
                                        throws Exception

Show the explorer page

Parameters:

model -

Returns:

the view name

Throws:

Exception

getModule

@RequestMapping(value="/module/{moduleId}",
                method=GET)
public String getModule(@PathVariable(value="moduleId")
                                                                                                String moduleId,
                                                                                                @RequestParam(value="entity")
                                                                                                String entityName,
                                                                                                org.springframework.ui.Model model)

getModules

@RequestMapping(value="/modules",
                method=GET)
 @ResponseBody
public ModulesConfigResponse getModules(@RequestParam(value="entity")
                                                                                                                     String entityName)

Returns modules configuration for this entity based on current user permissions.

Parameters:

entityName -

Returns:

download

@RequestMapping(value="/download",
                method=POST)
public void download(@RequestParam(value="dataRequest")
                                                                                     String dataRequestStr,
                                                                                     javax.servlet.http.HttpServletResponse response)
                                                                              throws IOException

Throws:

IOException

exportToGalaxy

@RequestMapping(value="/galaxy/export",
                method=POST)
 @ResponseStatus(value=OK)
public void exportToGalaxy(@RequestBody
                                                                                                                           GalaxyDataExportRequest galaxyDataExportRequest,
                                                                                                                           org.springframework.ui.Model model)
                                                                                                                    throws IOException

Throws:

IOException

viewEntityDetails

@RequestMapping(value="/details",
                method=POST)
public String viewEntityDetails(@RequestParam(value="entityName")
                                                                                               String entityName,
                                                                                               @RequestParam(value="entityId")
                                                                                               String entityId,
                                                                                               org.springframework.ui.Model model)
                                                                                        throws Exception

Builds a model containing one entity and returns the entityReport ftl view

Parameters:

entityName -

entityId -

model -

Returns:

entity report view

Throws:

Exception - if an entity name or id is not found

handleGalaxyDataExportException

@ExceptionHandler(value=GalaxyDataExportException.class)
 @ResponseBody
 @ResponseStatus(value=BAD_REQUEST)
public ErrorMessageResponse handleGalaxyDataExportException(GalaxyDataExportException e)

handleRuntimeException

@ExceptionHandler(value=java.lang.RuntimeException.class)
 @ResponseBody
 @ResponseStatus(value=INTERNAL_SERVER_ERROR)
public ErrorMessageResponse handleRuntimeException(RuntimeException e)