org.molgenis.dataexplorer.controller

Class AnnotatorController

java.lang.Object

org.molgenis.dataexplorer.controller.AnnotatorController

@Controller
 @RequestMapping(value="/annotators")
public class AnnotatorController
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static String	URI

Constructor Summary

Constructors

Constructor and Description
AnnotatorController(DataService dataService, AnnotationService annotationService, MolgenisPermissionService molgenisPermissionService, org.quartz.Scheduler scheduler, PermissionSystemService permissionSystemService, UserAccountService userAccountService)

Method Summary

Modifier and Type	Method and Description
String	annotateData(javax.servlet.http.HttpServletRequest request, String[] annotatorNames, String entityName, boolean createCopy) Annotates an entity based on selected entity and selected annotators.
Map<String,Map<String,Object>>	getMapOfAvailableAnnotators(String dataSetName) Gets a map of all available annotators.
ErrorMessageResponse	handleRuntimeException(RuntimeException e)
org.quartz.TriggerKey	scheduleAnnotatorRun(String entityName, List<RepositoryAnnotator> annotators)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

URI

public static final String URI

See Also:

Constant Field Values

Constructor Detail

AnnotatorController

@Autowired
public AnnotatorController(DataService dataService,
                                      AnnotationService annotationService,
                                      MolgenisPermissionService molgenisPermissionService,
                                      org.quartz.Scheduler scheduler,
                                      PermissionSystemService permissionSystemService,
                                      UserAccountService userAccountService)

Method Detail

getMapOfAvailableAnnotators

@RequestMapping(value="/get-available-annotators",
                method=POST)
 @ResponseBody
public Map<String,Map<String,Object>> getMapOfAvailableAnnotators(@RequestBody
                                                                                                                                                                 String dataSetName)

Gets a map of all available annotators.

Parameters:

dataSetName -

Returns:

annotatorMap

annotateData

@RequestMapping(value="/annotate-data",
                method=POST)
 @ResponseBody
public String annotateData(javax.servlet.http.HttpServletRequest request,
                                                                                                               @RequestParam(value="annotatorNames",required=false)
                                                                                                               String[] annotatorNames,
                                                                                                               @RequestParam(value="dataset-identifier")
                                                                                                               String entityName,
                                                                                                               @RequestParam(value="createCopy",required=false)
                                                                                                               boolean createCopy)

Annotates an entity based on selected entity and selected annotators. Creates a copy of the entity dataset if option is ticked by the user.

Parameters:

annotatorNames -

entityName -

createCopy -

Returns:

repositoryName

scheduleAnnotatorRun

public org.quartz.TriggerKey scheduleAnnotatorRun(String entityName,
                                                  List<RepositoryAnnotator> annotators)
                                           throws org.quartz.SchedulerException

Throws:

org.quartz.SchedulerException

handleRuntimeException

@ExceptionHandler(value=java.lang.RuntimeException.class)
 @ResponseBody
 @ResponseStatus(value=INTERNAL_SERVER_ERROR)
public ErrorMessageResponse handleRuntimeException(RuntimeException e)