A B C D E G H I M N O P R S U V W
All Classes All Packages

A

add(ModuleConfig) - Method in class org.molgenis.dataexplorer.controller.ModulesConfigResponse

AGGREGATION - org.molgenis.dataexplorer.controller.Module

ATTRIBUTE_LABELS - org.molgenis.dataexplorer.controller.DataRequest.ColNames

ATTRIBUTE_NAMES - org.molgenis.dataexplorer.controller.DataRequest.ColNames

B

BIOBANK_ID - Static variable in class org.molgenis.dataexplorer.negotiator.config.NegotiatorEntityConfigMetadata

C

Collection - Class in org.molgenis.dataexplorer.negotiator

Collection() - Constructor for class org.molgenis.dataexplorer.negotiator.Collection

COLLECTION_ID - Static variable in class org.molgenis.dataexplorer.negotiator.config.NegotiatorEntityConfigMetadata

create(boolean, String) - Static method in class org.molgenis.dataexplorer.negotiator.ExportValidationResponse

create(boolean, String, List<String>, List<String>) - Static method in class org.molgenis.dataexplorer.negotiator.ExportValidationResponse

create(String, String) - Static method in class org.molgenis.dataexplorer.controller.NavigatorLink

create(String, String) - Static method in class org.molgenis.dataexplorer.negotiator.Collection

create(String, String, String, String, String) - Static method in class org.molgenis.dataexplorer.negotiator.NegotiatorRequest

create(String, List<Collection>, String, String) - Static method in class org.molgenis.dataexplorer.negotiator.NegotiatorQuery

createDecoratedRepository(Repository<FreemarkerTemplate>) - Method in class org.molgenis.dataexplorer.decorator.EntityReportDecoratorFactory

D

DATA - org.molgenis.dataexplorer.controller.Module

DataExplorerController - Class in org.molgenis.dataexplorer.controller

Controller class for the data explorer.

DataExplorerController() - Constructor for class org.molgenis.dataexplorer.controller.DataExplorerController

DataExplorerDownloadHandler - Class in org.molgenis.dataexplorer.download

DataExplorerDownloadHandler(DataService, AttributeFactory) - Constructor for class org.molgenis.dataexplorer.download.DataExplorerDownloadHandler

DataExplorerPermissionConfig - Class in org.molgenis.dataexplorer

DataExplorerPermissionConfig(PermissionRegistry) - Constructor for class org.molgenis.dataexplorer.DataExplorerPermissionConfig

DataExplorerService - Interface in org.molgenis.dataexplorer.controller

DataExplorerServiceImpl - Class in org.molgenis.dataexplorer.controller

DataExplorerSettings - Class in org.molgenis.dataexplorer.settings

DataExplorerSettings() - Constructor for class org.molgenis.dataexplorer.settings.DataExplorerSettings

DataRequest - Class in org.molgenis.dataexplorer.controller

DataRequest() - Constructor for class org.molgenis.dataexplorer.controller.DataRequest

DataRequest.ColNames - Enum in org.molgenis.dataexplorer.controller

DataRequest.DownloadType - Enum in org.molgenis.dataexplorer.controller

DataRequest.EntityValues - Enum in org.molgenis.dataexplorer.controller

disabledCollections() - Method in class org.molgenis.dataexplorer.negotiator.ExportValidationResponse

download(String, HttpServletResponse) - Method in class org.molgenis.dataexplorer.controller.DataExplorerController

DOWNLOAD_TYPE_CSV - org.molgenis.dataexplorer.controller.DataRequest.DownloadType

DOWNLOAD_TYPE_XLSX - org.molgenis.dataexplorer.controller.DataRequest.DownloadType

E

ENABLED_EXPRESSION - Static variable in class org.molgenis.dataexplorer.negotiator.config.NegotiatorEntityConfigMetadata

enabledCollections() - Method in class org.molgenis.dataexplorer.negotiator.ExportValidationResponse

ENTITY - Static variable in class org.molgenis.dataexplorer.negotiator.config.NegotiatorEntityConfigMetadata

ENTITY_IDS - org.molgenis.dataexplorer.controller.DataRequest.EntityValues

ENTITY_LABELS - org.molgenis.dataexplorer.controller.DataRequest.EntityValues

EntityReportDecoratorFactory - Class in org.molgenis.dataexplorer.decorator

EntityReportDecoratorFactory(FreemarkerTemplateMetadata, UserPermissionEvaluator) - Constructor for class org.molgenis.dataexplorer.decorator.EntityReportDecoratorFactory

EntityReportPermissionChecker - Class in org.molgenis.dataexplorer.decorator

EntityTypeReportPermission - Enum in org.molgenis.dataexplorer

Permission to perform an action on an EntityType report.

exportToNegotiator(NegotiatorRequest) - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorController

ExportValidationResponse - Class in org.molgenis.dataexplorer.negotiator

ExportValidationResponse() - Constructor for class org.molgenis.dataexplorer.negotiator.ExportValidationResponse

G

getAggregatesDistinctOverrides() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getAggregatesDistinctSelect() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getAttributeNames() - Method in class org.molgenis.dataexplorer.controller.DataRequest

getBiobankId() - Method in class org.molgenis.dataexplorer.negotiator.Collection

getCollectionId() - Method in class org.molgenis.dataexplorer.negotiator.Collection

getCollections() - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorQuery

getColNames() - Method in class org.molgenis.dataexplorer.controller.DataRequest

getDefaultDescription() - Method in enum org.molgenis.dataexplorer.EntityTypeReportPermission

getDownloadFilename(String, LocalDateTime, DataRequest.DownloadType) - Method in class org.molgenis.dataexplorer.controller.DataExplorerController

getDownloadType() - Method in class org.molgenis.dataexplorer.controller.DataRequest

getEntityId() - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorRequest

getEntityName() - Method in class org.molgenis.dataexplorer.controller.DataRequest

getEntityReport(String) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getEntityReports() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getEntityValues() - Method in class org.molgenis.dataexplorer.controller.DataRequest

getGenomeBrowser() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getGenomeBrowserCoordSystem() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getGenomeBrowserHighlightRegion() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getGenomeBrowserLinks() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getGenomeBrowserLocation() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getGenomeBrowserSources() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getHeaderAbbreviate() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getHref() - Method in class org.molgenis.dataexplorer.controller.NavigatorLink

getHumanReadable() - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorQuery

getHumanReadable() - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorRequest

getIcon() - Method in class org.molgenis.dataexplorer.controller.ModuleConfig

getId() - Method in class org.molgenis.dataexplorer.controller.ModuleConfig

getItemSelection() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getLabel() - Method in class org.molgenis.dataexplorer.controller.ModuleConfig

getLabel() - Method in class org.molgenis.dataexplorer.controller.NavigatorLink

getLaunchWizard() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getModAggregates() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getModData() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getModReports() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getModStandaloneReports() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getModule(String, String, Model) - Method in class org.molgenis.dataexplorer.controller.DataExplorerController

getModules(String) - Method in class org.molgenis.dataexplorer.controller.DataExplorerController

Returns modules configuration for this entity based on current user permissions.

getModules(EntityType) - Method in interface org.molgenis.dataexplorer.controller.DataExplorerService

getModules(EntityType) - Method in class org.molgenis.dataexplorer.controller.DataExplorerServiceImpl

getNavigatorLinks(String) - Method in class org.molgenis.dataexplorer.controller.DataExplorerController

getNegotiatorConfig() - Method in class org.molgenis.dataexplorer.negotiator.config.NegotiatorEntityConfig

getNegotiatorURL() - Method in class org.molgenis.dataexplorer.negotiator.config.NegotiatorConfig

getnToken() - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorQuery

getnToken() - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorRequest

getPassword() - Method in class org.molgenis.dataexplorer.negotiator.config.NegotiatorConfig

getQuery() - Method in class org.molgenis.dataexplorer.controller.DataRequest

getRsql() - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorRequest

getSearchbox() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

getURL() - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorQuery

getURL() - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorRequest

getUsername() - Method in class org.molgenis.dataexplorer.negotiator.config.NegotiatorConfig

H

handleRuntimeException(RuntimeException) - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorController

I

ID - Static variable in class org.molgenis.dataexplorer.controller.DataExplorerController

ID - Static variable in class org.molgenis.dataexplorer.negotiator.NegotiatorController

init() - Method in class org.molgenis.dataexplorer.negotiator.config.NegotiatorEntityConfigMetadata

init() - Method in class org.molgenis.dataexplorer.negotiator.config.NegotiatorPackage

init(String, String, Model) - Method in class org.molgenis.dataexplorer.controller.DataExplorerController

Show the explorer page

isAddAllowed(FreemarkerTemplate) - Method in class org.molgenis.dataexplorer.decorator.EntityReportPermissionChecker

isCountAllowed(FreemarkerTemplate) - Method in class org.molgenis.dataexplorer.decorator.EntityReportPermissionChecker

isDeleteAllowed(FreemarkerTemplate) - Method in class org.molgenis.dataexplorer.decorator.EntityReportPermissionChecker

isReadAllowed(FreemarkerTemplate) - Method in class org.molgenis.dataexplorer.decorator.EntityReportPermissionChecker

isShowNavigatorLink() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

isUpdateAllowed(FreemarkerTemplate) - Method in class org.molgenis.dataexplorer.decorator.EntityReportPermissionChecker

isUseVueDataRowEdit() - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

isValid() - Method in class org.molgenis.dataexplorer.negotiator.ExportValidationResponse

M

MANAGE_REPORT - org.molgenis.dataexplorer.EntityTypeReportPermission

message() - Method in class org.molgenis.dataexplorer.negotiator.ExportValidationResponse

MOD_DATA - Static variable in class org.molgenis.dataexplorer.controller.DataExplorerController

MOD_ENTITIESREPORT - Static variable in class org.molgenis.dataexplorer.controller.DataExplorerController

Module - Enum in org.molgenis.dataexplorer.controller

ModuleConfig - Class in org.molgenis.dataexplorer.controller

ModuleConfig(String, String, String) - Constructor for class org.molgenis.dataexplorer.controller.ModuleConfig

ModulesConfigResponse - Class in org.molgenis.dataexplorer.controller

ModulesConfigResponse() - Constructor for class org.molgenis.dataexplorer.controller.ModulesConfigResponse

N

NAVIGATOR - Static variable in class org.molgenis.dataexplorer.controller.DataExplorerController

NavigatorLink - Class in org.molgenis.dataexplorer.controller

NavigatorLink() - Constructor for class org.molgenis.dataexplorer.controller.NavigatorLink

NEGOTIATOR_CONFIG - Static variable in class org.molgenis.dataexplorer.negotiator.config.NegotiatorEntityConfigMetadata

NegotiatorConfig - Class in org.molgenis.dataexplorer.negotiator.config

NegotiatorConfig(String, EntityType) - Constructor for class org.molgenis.dataexplorer.negotiator.config.NegotiatorConfig

NegotiatorConfig(Entity) - Constructor for class org.molgenis.dataexplorer.negotiator.config.NegotiatorConfig

NegotiatorConfig(EntityType) - Constructor for class org.molgenis.dataexplorer.negotiator.config.NegotiatorConfig

NegotiatorController - Class in org.molgenis.dataexplorer.negotiator

NegotiatorController(RestTemplate, UserPermissionEvaluator, DataService, QueryRsqlConverter, JsMagmaScriptEvaluator, MessageSource) - Constructor for class org.molgenis.dataexplorer.negotiator.NegotiatorController

NegotiatorEntityConfig - Class in org.molgenis.dataexplorer.negotiator.config

NegotiatorEntityConfig(String, EntityType) - Constructor for class org.molgenis.dataexplorer.negotiator.config.NegotiatorEntityConfig

NegotiatorEntityConfig(Entity) - Constructor for class org.molgenis.dataexplorer.negotiator.config.NegotiatorEntityConfig

NegotiatorEntityConfig(EntityType) - Constructor for class org.molgenis.dataexplorer.negotiator.config.NegotiatorEntityConfig

NEGOTIATORENTITYCONFIG - Static variable in class org.molgenis.dataexplorer.negotiator.config.NegotiatorEntityConfigMetadata

NegotiatorEntityConfigMetadata - Class in org.molgenis.dataexplorer.negotiator.config

NegotiatorEntityConfigMetadata(AttributeMetadata, EntityTypeMetadata, NegotiatorPackage, NegotiatorConfigMetadata) - Constructor for class org.molgenis.dataexplorer.negotiator.config.NegotiatorEntityConfigMetadata

NegotiatorPackage - Class in org.molgenis.dataexplorer.negotiator.config

NegotiatorPackage(PackageMetadata, RootSystemPackage) - Constructor for class org.molgenis.dataexplorer.negotiator.config.NegotiatorPackage

NegotiatorQuery - Class in org.molgenis.dataexplorer.negotiator

NegotiatorQuery() - Constructor for class org.molgenis.dataexplorer.negotiator.NegotiatorQuery

NegotiatorRequest - Class in org.molgenis.dataexplorer.negotiator

NegotiatorRequest() - Constructor for class org.molgenis.dataexplorer.negotiator.NegotiatorRequest

O

org.molgenis.dataexplorer - package org.molgenis.dataexplorer

org.molgenis.dataexplorer.controller - package org.molgenis.dataexplorer.controller

org.molgenis.dataexplorer.decorator - package org.molgenis.dataexplorer.decorator

org.molgenis.dataexplorer.download - package org.molgenis.dataexplorer.download

org.molgenis.dataexplorer.negotiator - package org.molgenis.dataexplorer.negotiator

org.molgenis.dataexplorer.negotiator.config - package org.molgenis.dataexplorer.negotiator.config

org.molgenis.dataexplorer.settings - package org.molgenis.dataexplorer.settings

P

PACKAGE_NEGOTIATOR - Static variable in class org.molgenis.dataexplorer.negotiator.config.NegotiatorPackage

R

registerPermissions() - Method in class org.molgenis.dataexplorer.DataExplorerPermissionConfig

REPORT - org.molgenis.dataexplorer.controller.Module

S

setAggregatesDistinctOverrides(Map<String, String>) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setAggregatesDistinctSelect(boolean) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setAttributeNames(List<String>) - Method in class org.molgenis.dataexplorer.controller.DataRequest

setColNames(DataRequest.ColNames) - Method in class org.molgenis.dataexplorer.controller.DataRequest

setDownloadType(DataRequest.DownloadType) - Method in class org.molgenis.dataexplorer.controller.DataRequest

setEntityName(String) - Method in class org.molgenis.dataexplorer.controller.DataRequest

setEntityReports(String) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setEntityValues(DataRequest.EntityValues) - Method in class org.molgenis.dataexplorer.controller.DataRequest

setGenomeBrowser(boolean) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setGenomeBrowserCoordSystem(String) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setGenomeBrowserHighlightRegion(boolean) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setGenomeBrowserLinks(String) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setGenomeBrowserLocation(String) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setGenomeBrowserSources(String) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setHeaderAbbreviate(int) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setItemSelection(boolean) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setLaunchWizard(boolean) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setModAggregates(boolean) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setModData(boolean) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setModReports(boolean) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setModStandaloneReports(boolean) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setQuery(QueryImpl<Entity>) - Method in class org.molgenis.dataexplorer.controller.DataRequest

setSearchbox(boolean) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

setShowNavigatorLink(boolean) - Method in class org.molgenis.dataexplorer.settings.DataExplorerSettings

showCopy(String) - Method in class org.molgenis.dataexplorer.controller.DataExplorerController

showDirectoryButton(String) - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorController

U

URI - Static variable in class org.molgenis.dataexplorer.controller.DataExplorerController

V

validateNegotiatorExport(NegotiatorRequest) - Method in class org.molgenis.dataexplorer.negotiator.NegotiatorController

valueOf(String) - Static method in enum org.molgenis.dataexplorer.controller.DataRequest.ColNames

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.dataexplorer.controller.DataRequest.DownloadType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.dataexplorer.controller.DataRequest.EntityValues

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.dataexplorer.controller.Module

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.dataexplorer.EntityTypeReportPermission

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.molgenis.dataexplorer.controller.DataRequest.ColNames

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.dataexplorer.controller.DataRequest.DownloadType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.dataexplorer.controller.DataRequest.EntityValues

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.dataexplorer.controller.Module

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.dataexplorer.EntityTypeReportPermission

Returns an array containing the constants of this enum type, in the order they are declared.

VIEW_NAME - Static variable in class org.molgenis.dataexplorer.controller.DataExplorerController

VIEW_REPORT - org.molgenis.dataexplorer.EntityTypeReportPermission

viewEntityDetails(String, String, Model) - Method in class org.molgenis.dataexplorer.controller.DataExplorerController

Builds a model containing one entity and returns the entityReport ftl view

viewEntityDetailsById(String, String, Model) - Method in class org.molgenis.dataexplorer.controller.DataExplorerController

Builds a model containing one entity and returns standalone report ftl view

W

writeToCsv(DataRequest, OutputStream, char) - Method in class org.molgenis.dataexplorer.download.DataExplorerDownloadHandler

writeToCsv(DataRequest, OutputStream, char, boolean) - Method in class org.molgenis.dataexplorer.download.DataExplorerDownloadHandler

writeToExcel(DataRequest, OutputStream) - Method in class org.molgenis.dataexplorer.download.DataExplorerDownloadHandler

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