Package org.molgenis.dataexplorer.negotiator

Class NegotiatorController

java.lang.Object

org.molgenis.web.PluginController

org.molgenis.dataexplorer.negotiator.NegotiatorController

@Controller
@RequestMapping("/plugin/directory")
public class NegotiatorController
extends org.molgenis.web.PluginController

Field Summary

Fields

Modifier and Type	Field	Description
static String	ID

Fields inherited from class org.molgenis.web.PluginController

PLUGIN_URI_PREFIX

Constructor Summary

Constructors

Constructor	Description
NegotiatorController(org.springframework.web.client.RestTemplate restTemplate, org.molgenis.security.core.UserPermissionEvaluator permissions, DataService dataService, org.molgenis.web.rsql.QueryRsqlConverter rsqlQueryConverter, org.molgenis.js.magma.JsMagmaScriptEvaluator jsMagmaScriptEvaluator, org.springframework.context.MessageSource messageSource)

Method Summary

Modifier and Type	Method	Description
String	exportToNegotiator(NegotiatorRequest request)	Sends a NegotiatorQuery to the negotiator.
org.molgenis.web.ErrorMessageResponse	handleRuntimeException(RuntimeException e)
boolean	showDirectoryButton(String entityTypeId)
ExportValidationResponse	validateNegotiatorExport(NegotiatorRequest request)	Validates a NegotiatorRequest.

Methods inherited from class org.molgenis.web.PluginController

getId, getPluginSettings, getUri

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ID

public static final String ID

See Also:

Constant Field Values

Constructor Detail

NegotiatorController

public NegotiatorController(org.springframework.web.client.RestTemplate restTemplate,
                            org.molgenis.security.core.UserPermissionEvaluator permissions,
                            DataService dataService,
                            org.molgenis.web.rsql.QueryRsqlConverter rsqlQueryConverter,
                            org.molgenis.js.magma.JsMagmaScriptEvaluator jsMagmaScriptEvaluator,
                            org.springframework.context.MessageSource messageSource)

Method Detail

showDirectoryButton

public boolean showDirectoryButton(String entityTypeId)

validateNegotiatorExport

@PostMapping("/validate")
@ResponseBody
public ExportValidationResponse validateNegotiatorExport(@RequestBody
                                                         NegotiatorRequest request)

Validates a NegotiatorRequest.

Used by the data explorer to verify the request. Since the data explorer does not allow filtering on more than one repository, this endpoint does *NOT* support providing biobankRsql.

• Checks if disabled collections are selected.
• Checks if at least one collection is left after filtering out the disabled ones.

Parameters:

request - the request to validate

Returns:

ExportValidationResponse

Throws:

MolgenisDataException - if the negotiator is not configured for this entity type

exportToNegotiator

@PostMapping("/export")
@ResponseBody
public String exportToNegotiator(@RequestBody
                                 NegotiatorRequest request)

Sends a NegotiatorQuery to the negotiator.

Filters the repositories using the rsql in the request and sends the matching collections with their biobanks to the negotiator.

Allows an extra biobankRsql expression to filter the biobanks as well. This allows you to filter on xref/mref values in the biobank, which would otherwise be impossible unless you increase the indexing depth on the collections to 2.

Determines negotiator information based on NegotiatorEntityConfig and NegotiatorConfig stored in the database.

Parameters:

request - NegotiatorRequest

Returns:

Location on the Negotiator where the negotiation can be started.

handleRuntimeException

@ExceptionHandler(java.lang.RuntimeException.class)
@ResponseBody
@ResponseStatus(INTERNAL_SERVER_ERROR)
public org.molgenis.web.ErrorMessageResponse handleRuntimeException(RuntimeException e)