A C D E F G I J L M N O Q R S T U

A

ACTIVE - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData

add(Entity) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

add(Stream<? extends Entity>) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

addEntityListener(EntityListener) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

aggregate(AggregateQuery) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

C

call(Progress) - Method in class org.molgenis.file.ingest.execution.FileIngestJob

clearCache() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

close() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

count() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

count(Query) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

create() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

createJob(FileIngestJobExecution) - Method in class org.molgenis.file.ingest.execution.FileIngestJobFactory

CRONEXPRESSION - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData

D

delete(Entity) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

delete(Stream<? extends Entity>) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

deleteAll() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

deleteById(Object) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

deleteById(Stream<Object>) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

DESCRIPTION - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData

downloadFile(String, String, String) - Method in interface org.molgenis.file.ingest.execution.FileStoreDownload

downloadFile(String, String, String) - Method in class org.molgenis.file.ingest.execution.FileStoreDownloadImpl

drop() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

E

ENTITY_KEY - Static variable in class org.molgenis.file.ingest.FileIngesterQuartzJob

ENTITY_META_DATA - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData

ENTITY_NAME - Static variable in class org.molgenis.file.ingest.meta.FileIngestJobExecutionMetaData

ENTITY_NAME - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData

execute(JobExecutionContext) - Method in class org.molgenis.file.ingest.FileIngesterQuartzJob

F

FAILURE_EMAIL - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData

FILE - Static variable in class org.molgenis.file.ingest.meta.FileIngestJobExecutionMetaData

FILE_INGEST - Static variable in class org.molgenis.file.ingest.meta.FileIngestJobExecutionMetaData

FileIngest - Class in org.molgenis.file.ingest.meta

FileIngest(DataService) - Constructor for class org.molgenis.file.ingest.meta.FileIngest

FileIngester - Class in org.molgenis.file.ingest.execution

Imports a file from a remote url.

FileIngester(FileStoreDownload, ImportServiceFactory, FileRepositoryCollectionFactory, DataService) - Constructor for class org.molgenis.file.ingest.execution.FileIngester

FileIngesterConfig - Class in org.molgenis.file.ingest

FileIngesterConfig() - Constructor for class org.molgenis.file.ingest.FileIngesterConfig

FileIngesterJobScheduler - Class in org.molgenis.file.ingest

Schedule and unschedule FileIngestJobs

FileIngesterJobScheduler(Scheduler, DataService) - Constructor for class org.molgenis.file.ingest.FileIngesterJobScheduler

FileIngesterPluginController - Class in org.molgenis.file.ingest

FileIngesterPluginController(FileIngesterJobScheduler) - Constructor for class org.molgenis.file.ingest.FileIngesterPluginController

FileIngesterQuartzJob - Class in org.molgenis.file.ingest

FileIngester quartz job It prevents concurrent execution of jobs with the same JobKey

FileIngesterQuartzJob() - Constructor for class org.molgenis.file.ingest.FileIngesterQuartzJob

FileIngesterQuartzJob(FileIngestJobFactory, DataService) - Constructor for class org.molgenis.file.ingest.FileIngesterQuartzJob

FileIngestException - Exception in org.molgenis.file.ingest.execution

FileIngestException() - Constructor for exception org.molgenis.file.ingest.execution.FileIngestException

FileIngestException(String, Throwable, boolean, boolean) - Constructor for exception org.molgenis.file.ingest.execution.FileIngestException

FileIngestException(String, Throwable) - Constructor for exception org.molgenis.file.ingest.execution.FileIngestException

FileIngestException(String) - Constructor for exception org.molgenis.file.ingest.execution.FileIngestException

FileIngestException(Throwable) - Constructor for exception org.molgenis.file.ingest.execution.FileIngestException

FileIngestJob - Class in org.molgenis.file.ingest.execution

FileIngestJob(Progress, TransactionTemplate, Authentication, FileIngester, String, String, String, String, String) - Constructor for class org.molgenis.file.ingest.execution.FileIngestJob

FileIngestJobExecution - Class in org.molgenis.file.ingest.meta

FileIngestJobExecution(DataService) - Constructor for class org.molgenis.file.ingest.meta.FileIngestJobExecution

FileIngestJobExecutionMetaData - Class in org.molgenis.file.ingest.meta

FileIngestJobExecutionMetaData() - Constructor for class org.molgenis.file.ingest.meta.FileIngestJobExecutionMetaData

FileIngestJobFactory - Class in org.molgenis.file.ingest.execution

FileIngestJobFactory(DataService, UserDetailsService, JobExecutionUpdater, PlatformTransactionManager, FileIngester, MailSender) - Constructor for class org.molgenis.file.ingest.execution.FileIngestJobFactory

FileIngestMetaData - Class in org.molgenis.file.ingest.meta

FileIngestMetaData() - Constructor for class org.molgenis.file.ingest.meta.FileIngestMetaData

FileIngestRepositoryDecorator - Class in org.molgenis.file.ingest

FileIngestRepositoryDecorator(Repository, FileIngesterJobScheduler, DataService) - Constructor for class org.molgenis.file.ingest.FileIngestRepositoryDecorator

FileStoreDownload - Interface in org.molgenis.file.ingest.execution

Downloads a file and stores it in the FileStore

FileStoreDownloadImpl - Class in org.molgenis.file.ingest.execution

Downloads a file from a URL to the FileStore

FileStoreDownloadImpl(FileStore) - Constructor for class org.molgenis.file.ingest.execution.FileStoreDownloadImpl

findAll(Query) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

findAll(Stream<Object>) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

findAll(Stream<Object>, Fetch) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

findOne(Query) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

findOne(Object) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

findOne(Object, Fetch) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

flush() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

G

getCapabilities() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

getCronExpression() - Method in class org.molgenis.file.ingest.meta.FileIngest

getDescription() - Method in class org.molgenis.file.ingest.meta.FileIngest

getEntityMetaData() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

getFailureEmail() - Method in class org.molgenis.file.ingest.meta.FileIngest

getFile() - Method in class org.molgenis.file.ingest.meta.FileIngestJobExecution

getFileIngest() - Method in class org.molgenis.file.ingest.meta.FileIngestJobExecution

getIdentifier() - Method in class org.molgenis.file.ingest.meta.FileIngest

getLoader() - Method in class org.molgenis.file.ingest.meta.FileIngest

getName() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

getName() - Method in class org.molgenis.file.ingest.meta.FileIngest

getTargetEntityName() - Method in class org.molgenis.file.ingest.meta.FileIngest

getUrl() - Method in class org.molgenis.file.ingest.meta.FileIngest

I

ID - Static variable in class org.molgenis.file.ingest.FileIngesterPluginController

ID - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData

ingest(String, String, String, String, Progress, String) - Method in class org.molgenis.file.ingest.execution.FileIngester

Imports a csv file defined in the fileIngest entity

init() - Method in class org.molgenis.file.ingest.FileIngesterConfig

init() - Method in class org.molgenis.file.ingest.FileIngesterPluginController

isActive() - Method in class org.molgenis.file.ingest.meta.FileIngest

iterator() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

J

JOB_GROUP - Static variable in class org.molgenis.file.ingest.FileIngesterJobScheduler

L

LOADER - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData

LOADERS - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData

M

META_DATA - Static variable in class org.molgenis.file.ingest.meta.FileIngest

META_DATA - Static variable in class org.molgenis.file.ingest.meta.FileIngestJobExecution

N

NAME - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData

O

onApplicationEvent(ContextRefreshedEvent) - Method in class org.molgenis.file.ingest.FileIngesterJobScheduler

org.molgenis.file.ingest - package org.molgenis.file.ingest

org.molgenis.file.ingest.execution - package org.molgenis.file.ingest.execution

org.molgenis.file.ingest.meta - package org.molgenis.file.ingest.meta

Q

query() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

R

rebuildIndex() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

removeEntityListener(EntityListener) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

runNow(String) - Method in class org.molgenis.file.ingest.FileIngesterJobScheduler

Execute FileIngest job immediately

runNow(String) - Method in class org.molgenis.file.ingest.FileIngesterPluginController

S

schedule(Entity) - Method in class org.molgenis.file.ingest.FileIngesterJobScheduler

Schedule a FileIngest job with a cron expression defined in the entity.

setFile(FileMeta) - Method in class org.molgenis.file.ingest.meta.FileIngestJobExecution

setFileIngest(FileIngest) - Method in class org.molgenis.file.ingest.meta.FileIngestJobExecution

stream(Fetch) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

T

TRIGGER_GROUP - Static variable in class org.molgenis.file.ingest.FileIngesterJobScheduler

U

unschedule(String) - Method in class org.molgenis.file.ingest.FileIngesterJobScheduler

Remove a job from the scheduler

update(Entity) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

update(Stream<? extends Entity>) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator

URI - Static variable in class org.molgenis.file.ingest.FileIngesterPluginController

URL - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData

A C D E F G I J L M N O Q R S T U