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A C D E F G I J L N O R S T U 

A

ACTIVE - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData
 
add(Entity) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator
 
add(Stream<Entity>) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator
 

C

call(Progress) - Method in class org.molgenis.file.ingest.execution.FileIngestJob
 
createJob(FileIngestJobExecution) - Method in class org.molgenis.file.ingest.execution.FileIngestJobFactory
 
CRONEXPRESSION - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData
 

D

delegate() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator
 
delete(Entity) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator
 
delete(Stream<Entity>) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator
 
deleteAll(Stream<Object>) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator
 
deleteAll() - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator
 
deleteById(Object) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator
 
DESCRIPTION - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData
 
downloadFile(String, String, String) - Method in interface org.molgenis.file.ingest.execution.FileStoreDownload
 
downloadFile(String, String, String) - Method in class org.molgenis.file.ingest.execution.FileStoreDownloadImpl
 

E

ENTITY_KEY - Static variable in class org.molgenis.file.ingest.FileIngesterQuartzJob
 
ENTITY_META_DATA - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData
 
execute(JobExecutionContext) - Method in class org.molgenis.file.ingest.FileIngesterQuartzJob
 

F

FAILURE_EMAIL - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData
 
FILE - Static variable in class org.molgenis.file.ingest.meta.FileIngestJobExecutionMetaData
 
FILE_INGEST - Static variable in class org.molgenis.file.ingest.meta.FileIngestJobExecutionMetaData
 
FILE_INGEST - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData
 
FILE_INGEST_JOB_EXECUTION - Static variable in class org.molgenis.file.ingest.meta.FileIngestJobExecutionMetaData
 
FILE_INGEST_JOB_TYPE - Static variable in class org.molgenis.file.ingest.meta.FileIngestJobExecutionMetaData
 
FileIngest - Class in org.molgenis.file.ingest.meta
 
FileIngest(Entity) - Constructor for class org.molgenis.file.ingest.meta.FileIngest
 
FileIngest(EntityType) - Constructor for class org.molgenis.file.ingest.meta.FileIngest
 
FileIngest(String, EntityType) - Constructor for class org.molgenis.file.ingest.meta.FileIngest
 
FileIngester - Class in org.molgenis.file.ingest.execution
Imports a file from a remote url.
FileIngester(FileStoreDownload, ImportServiceFactory, FileRepositoryCollectionFactory, FileMetaFactory, DataService) - Constructor for class org.molgenis.file.ingest.execution.FileIngester
 
FileIngesterConfig - Class in org.molgenis.file.ingest
 
FileIngesterConfig() - Constructor for class org.molgenis.file.ingest.FileIngesterConfig
 
FileIngesterJobRegistrar - Class in org.molgenis.file.ingest
Discovers FileIngest jobs and schedules them using FileIngesterJobScheduler
FileIngesterJobRegistrar(FileIngesterJobScheduler, DataService) - Constructor for class org.molgenis.file.ingest.FileIngesterJobRegistrar
 
FileIngesterJobScheduler - Class in org.molgenis.file.ingest
Schedule and unschedule FileIngestJobs
FileIngesterJobScheduler(Scheduler, DataService) - Constructor for class org.molgenis.file.ingest.FileIngesterJobScheduler
 
FileIngesterPluginController - Class in org.molgenis.file.ingest
 
FileIngesterPluginController(FileIngesterJobScheduler) - Constructor for class org.molgenis.file.ingest.FileIngesterPluginController
 
FileIngesterQuartzJob - Class in org.molgenis.file.ingest
FileIngester quartz job
FileIngesterQuartzJob() - Constructor for class org.molgenis.file.ingest.FileIngesterQuartzJob
 
FileIngesterQuartzJob(FileIngestJobFactory, DataService) - Constructor for class org.molgenis.file.ingest.FileIngesterQuartzJob
 
FileIngestException - Exception in org.molgenis.file.ingest.execution
 
FileIngestException() - Constructor for exception org.molgenis.file.ingest.execution.FileIngestException
 
FileIngestException(String, Throwable, boolean, boolean) - Constructor for exception org.molgenis.file.ingest.execution.FileIngestException
 
FileIngestException(String, Throwable) - Constructor for exception org.molgenis.file.ingest.execution.FileIngestException
 
FileIngestException(String) - Constructor for exception org.molgenis.file.ingest.execution.FileIngestException
 
FileIngestException(Throwable) - Constructor for exception org.molgenis.file.ingest.execution.FileIngestException
 
FileIngestFactory - Class in org.molgenis.file.ingest.meta
 
FileIngestJob - Class in org.molgenis.file.ingest.execution
 
FileIngestJob(Progress, TransactionTemplate, Authentication, FileIngester, String, String, String, String, String) - Constructor for class org.molgenis.file.ingest.execution.FileIngestJob
 
FileIngestJobExecution - Class in org.molgenis.file.ingest.meta
 
FileIngestJobExecution(Entity) - Constructor for class org.molgenis.file.ingest.meta.FileIngestJobExecution
 
FileIngestJobExecution(EntityType) - Constructor for class org.molgenis.file.ingest.meta.FileIngestJobExecution
 
FileIngestJobExecution(String, EntityType) - Constructor for class org.molgenis.file.ingest.meta.FileIngestJobExecution
 
FileIngestJobExecutionFactory - Class in org.molgenis.file.ingest.meta
 
FileIngestJobExecutionMetaData - Class in org.molgenis.file.ingest.meta
 
FileIngestJobFactory - Class in org.molgenis.file.ingest.execution
 
FileIngestJobFactory(DataService, UserDetailsService, JobExecutionUpdater, PlatformTransactionManager, FileIngester, MailSender) - Constructor for class org.molgenis.file.ingest.execution.FileIngestJobFactory
 
FileIngestMetaData - Class in org.molgenis.file.ingest.meta
 
FileIngestMetaData(EntityTypeMetadata) - Constructor for class org.molgenis.file.ingest.meta.FileIngestMetaData
 
FileIngestRepositoryDecorator - Class in org.molgenis.file.ingest
 
FileIngestRepositoryDecorator(Repository<Entity>, FileIngesterJobScheduler, DataService) - Constructor for class org.molgenis.file.ingest.FileIngestRepositoryDecorator
 
FileStoreDownload - Interface in org.molgenis.file.ingest.execution
Downloads a file and stores it in the FileStore
FileStoreDownloadImpl - Class in org.molgenis.file.ingest.execution
Downloads a file from a URL to the FileStore
FileStoreDownloadImpl(FileStore) - Constructor for class org.molgenis.file.ingest.execution.FileStoreDownloadImpl
 

G

getCronExpression() - Method in class org.molgenis.file.ingest.meta.FileIngest
 
getDescription() - Method in class org.molgenis.file.ingest.meta.FileIngest
 
getFailureEmail() - Method in class org.molgenis.file.ingest.meta.FileIngest
 
getFile() - Method in class org.molgenis.file.ingest.meta.FileIngestJobExecution
 
getFileIngest() - Method in class org.molgenis.file.ingest.meta.FileIngestJobExecution
 
getId() - Method in class org.molgenis.file.ingest.meta.FileIngest
 
getLoader() - Method in class org.molgenis.file.ingest.meta.FileIngest
 
getName() - Method in class org.molgenis.file.ingest.meta.FileIngest
 
getTargetEntityName() - Method in class org.molgenis.file.ingest.meta.FileIngest
 
getUrl() - Method in class org.molgenis.file.ingest.meta.FileIngest
 

I

ID - Static variable in class org.molgenis.file.ingest.FileIngesterPluginController
 
ID - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData
 
ingest(String, String, String, String, Progress, String) - Method in class org.molgenis.file.ingest.execution.FileIngester
Imports a csv file defined in the fileIngest entity
init() - Method in class org.molgenis.file.ingest.FileIngesterConfig
 
init() - Method in class org.molgenis.file.ingest.FileIngesterPluginController
 
init() - Method in class org.molgenis.file.ingest.meta.FileIngestJobExecutionMetaData
 
init() - Method in class org.molgenis.file.ingest.meta.FileIngestMetaData
 
isActive() - Method in class org.molgenis.file.ingest.meta.FileIngest
 

J

JOB_GROUP - Static variable in class org.molgenis.file.ingest.FileIngesterJobScheduler
 

L

LOADER - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData
 
LOADERS - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData
 

N

NAME - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData
 

O

org.molgenis.file.ingest - package org.molgenis.file.ingest
 
org.molgenis.file.ingest.execution - package org.molgenis.file.ingest.execution
 
org.molgenis.file.ingest.meta - package org.molgenis.file.ingest.meta
 

R

runNow(String) - Method in class org.molgenis.file.ingest.FileIngesterJobScheduler
Execute FileIngest job immediately
runNow(String) - Method in class org.molgenis.file.ingest.FileIngesterPluginController
 

S

schedule(Entity) - Method in class org.molgenis.file.ingest.FileIngesterJobScheduler
Schedule a FileIngest job with a cron expression defined in the entity.
scheduleJobs() - Method in class org.molgenis.file.ingest.FileIngesterJobRegistrar
 
setActive(boolean) - Method in class org.molgenis.file.ingest.meta.FileIngest
 
setCronExpression(String) - Method in class org.molgenis.file.ingest.meta.FileIngest
 
setDescription(String) - Method in class org.molgenis.file.ingest.meta.FileIngest
 
setFailureEmail(String) - Method in class org.molgenis.file.ingest.meta.FileIngest
 
setFile(FileMeta) - Method in class org.molgenis.file.ingest.meta.FileIngestJobExecution
 
setFileIngest(FileIngest) - Method in class org.molgenis.file.ingest.meta.FileIngestJobExecution
 
setId(String) - Method in class org.molgenis.file.ingest.meta.FileIngest
 
setLoader(String) - Method in class org.molgenis.file.ingest.meta.FileIngest
 
setName(String) - Method in class org.molgenis.file.ingest.meta.FileIngest
 
setTargetEntity(EntityType) - Method in class org.molgenis.file.ingest.meta.FileIngest
 
setUrl(URL) - Method in class org.molgenis.file.ingest.meta.FileIngest
 

T

TRIGGER_GROUP - Static variable in class org.molgenis.file.ingest.FileIngesterJobScheduler
 

U

unschedule(String) - Method in class org.molgenis.file.ingest.FileIngesterJobScheduler
Remove a job from the scheduler
update(Entity) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator
 
update(Stream<Entity>) - Method in class org.molgenis.file.ingest.FileIngestRepositoryDecorator
 
URI - Static variable in class org.molgenis.file.ingest.FileIngesterPluginController
 
URL - Static variable in class org.molgenis.file.ingest.meta.FileIngestMetaData
 
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