org.molgenis.genomebrowser

Class GenomeBrowserTrack

java.lang.Object

org.molgenis.genomebrowser.GenomeBrowserTrack

public abstract class GenomeBrowserTrack
extends Object

Constructor Summary

Constructors

Constructor and Description
GenomeBrowserTrack()

Method Summary

Modifier and Type	Method and Description
static GenomeBrowserTrack	create(GenomeBrowserSettings settings)
static GenomeBrowserTrack	create(String id, String label, String labelAttr, EntityType entity, GenomeBrowserSettings.TrackType trackType, Iterable<GenomeBrowserTrack> molgenisReferenceTracks, GenomeBrowserSettings.MolgenisReferenceMode molgenisReferenceMode, GenomeBrowserAttributes genomeBrowserAttrs, String actions, String attrs, String scoreAttr, String exonKey)
abstract String	getActions()
abstract String	getAttrs()
abstract EntityType	getEntity()
abstract String	getExonKey()
abstract GenomeBrowserAttributes	getGenomeBrowserAttrs()
abstract String	getId()
abstract String	getLabel()
abstract String	getLabelAttr()
abstract GenomeBrowserSettings.MolgenisReferenceMode	getMolgenisReferenceMode()
abstract Iterable<GenomeBrowserTrack>	getMolgenisReferenceTracks()
abstract String	getScoreAttr()
abstract GenomeBrowserSettings.TrackType	getTrackType()
org.json.JSONObject	toTrackJson()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenomeBrowserTrack

public GenomeBrowserTrack()

Method Detail

create

public static GenomeBrowserTrack create(String id,
                                        String label,
                                        String labelAttr,
                                        EntityType entity,
                                        GenomeBrowserSettings.TrackType trackType,
                                        Iterable<GenomeBrowserTrack> molgenisReferenceTracks,
                                        GenomeBrowserSettings.MolgenisReferenceMode molgenisReferenceMode,
                                        GenomeBrowserAttributes genomeBrowserAttrs,
                                        String actions,
                                        String attrs,
                                        String scoreAttr,
                                        String exonKey)

create

public static GenomeBrowserTrack create(GenomeBrowserSettings settings)

getId

public abstract String getId()

getLabel

public abstract String getLabel()

getLabelAttr

public abstract String getLabelAttr()

getEntity

public abstract EntityType getEntity()

getTrackType

public abstract GenomeBrowserSettings.TrackType getTrackType()

getMolgenisReferenceTracks

@Nullable
public abstract Iterable<GenomeBrowserTrack> getMolgenisReferenceTracks()

getMolgenisReferenceMode

public abstract GenomeBrowserSettings.MolgenisReferenceMode getMolgenisReferenceMode()

getGenomeBrowserAttrs

public abstract GenomeBrowserAttributes getGenomeBrowserAttrs()

getActions

@Nullable
public abstract String getActions()

getAttrs

@Nullable
public abstract String getAttrs()

getScoreAttr

@Nullable
public abstract String getScoreAttr()

getExonKey

@Nullable
public abstract String getExonKey()

toTrackJson

public org.json.JSONObject toTrackJson()