A C D E F G I L M N O P R S T U V

A

ACTIONS - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

ALL - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

ALT - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata

API - Static variable in class org.molgenis.genomebrowser.service.GenomeBrowserService

ATTRS - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

C

CHROM - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata

compareTo(GenomeBrowserAttributes) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

CONFIGURED - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

create(String, String, String, EntityType, GenomeBrowserSettings.TrackType, Iterable<GenomeBrowserTrack>, GenomeBrowserSettings.MolgenisReferenceMode, GenomeBrowserAttributes, String, String, String, String, String) - Static method in class org.molgenis.genomebrowser.GenomeBrowserTrack

create(GenomeBrowserSettings) - Static method in class org.molgenis.genomebrowser.GenomeBrowserTrack

create(String, boolean, int, String, String, String, String, String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesFactory

D

DEFAULT - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata

E

ENTITY - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

EXON - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

EXON_KEY - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

F

FEATURE_INFO_PLUGIN - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

G

GENOME_BROWSER_ATTRS - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

GenomeBrowserAttributes - Class in org.molgenis.genomebrowser.meta

GenomeBrowserAttributes(Entity) - Constructor for class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

GenomeBrowserAttributes(EntityType) - Constructor for class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

GenomeBrowserAttributes(String, EntityType) - Constructor for class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

GENOMEBROWSERATTRIBUTES - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata

GenomeBrowserAttributesFactory - Class in org.molgenis.genomebrowser.meta

GenomeBrowserAttributesMetadata - Class in org.molgenis.genomebrowser.meta

GenomeBrowserAttributesMetadata(GenomeBrowserPackage) - Constructor for class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata

GenomeBrowserPackage - Class in org.molgenis.genomebrowser.meta

GenomeBrowserPackage(PackageMetadata, RootSystemPackage) - Constructor for class org.molgenis.genomebrowser.meta.GenomeBrowserPackage

GenomeBrowserService - Class in org.molgenis.genomebrowser.service

Service implements genomeBrowser specific business logic.

GenomeBrowserService(DataService, UserPermissionEvaluator) - Constructor for class org.molgenis.genomebrowser.service.GenomeBrowserService

GenomeBrowserSettings - Class in org.molgenis.genomebrowser.meta

GenomeBrowserSettings(Entity) - Constructor for class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

GenomeBrowserSettings(EntityType) - Constructor for class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

GenomeBrowserSettings(String, EntityType) - Constructor for class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

GENOMEBROWSERSETTINGS - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

GenomeBrowserSettings.MolgenisReferenceMode - Enum in org.molgenis.genomebrowser.meta

GenomeBrowserSettings.TrackType - Enum in org.molgenis.genomebrowser.meta

GenomeBrowserSettingsFactory - Class in org.molgenis.genomebrowser.meta

GenomeBrowserSettingsMetadata - Class in org.molgenis.genomebrowser.meta

GenomeBrowserSettingsMetadata(AttributeMetadata, EntityTypeMetadata, GenomeBrowserAttributesMetadata, GenomeBrowserPackage) - Constructor for class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

GenomeBrowserTrack - Class in org.molgenis.genomebrowser

GenomeBrowserTrack() - Constructor for class org.molgenis.genomebrowser.GenomeBrowserTrack

getActions() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getActions() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

getAlt() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

getAttrs() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getAttrs() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

getChrom() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

getEntity() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getEntity() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

getExonKey() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getExonKey() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

getFeatureInfoPlugin() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getFeatureInfoPlugin() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

getGenomeBrowserAttrs() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getGenomeBrowserAttrs() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

getGenomeBrowserTracks(EntityType) - Method in class org.molgenis.genomebrowser.service.GenomeBrowserService

getGenomeBrowserTracksAsString(String) - Method in class org.molgenis.genomebrowser.service.GenomeBrowserService

getId() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getIdentifier() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

getIdentifier() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

getLabel() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getLabel() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

getLabelAttr() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getLabelAttr() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

getMolgenisReferenceMode() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getMolgenisReferenceMode() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

getMolgenisReferenceTracks() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getMolgenisReferenceTracks() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

getOrder() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

getPos() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

getRef() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

getScoreAttr() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getScoreAttr() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

getStop() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

getTracksString(Map<String, GenomeBrowserTrack>) - Method in class org.molgenis.genomebrowser.service.GenomeBrowserService

Get readable genome entities

getTrackType() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

getTrackType() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

I

iDefault() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

IDENTIFIER - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata

IDENTIFIER - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

init() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata

init() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserPackage

init() - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

L

LABEL - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

LABEL_ATTR - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

M

MOLGENIS_REFERENCE_TRACKS - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

MOLGENIS_REFERENCES_MODE - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

N

NONE - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

NUMERIC - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

O

ORDER - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata

org.molgenis.genomebrowser - package org.molgenis.genomebrowser

org.molgenis.genomebrowser.meta - package org.molgenis.genomebrowser.meta

org.molgenis.genomebrowser.service - package org.molgenis.genomebrowser.service

P

PACKAGE_GENOME_BROWSER - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserPackage

POS - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata

R

REF - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata

S

SCORE_ATTR - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

setActions(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

setAlt(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

setAttrs(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

setChrom(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

setDefault(Boolean) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

setEntity(EntityType) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

setExonKey(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

setFeatureInfoPlugin(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

setGenomeBrowserAttrs(GenomeBrowserAttributes) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

setIdentifier(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

setIdentifier(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

setLabel(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

setLabelAttr(Attribute) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

setMolgenisReferenceMode(GenomeBrowserSettings.MolgenisReferenceMode) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

setMolgenisReferenceTracks(GenomeBrowserSettings) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

setOrder(Integer) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

setPos(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

setRef(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

setScoreAttr(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

setStop(String) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributes

setTrackType(GenomeBrowserSettings.TrackType) - Method in class org.molgenis.genomebrowser.meta.GenomeBrowserSettings

SIMPLE_NAME - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata

SIMPLE_NAME - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserPackage

SIMPLE_NAME - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

STOP - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserAttributesMetadata

T

toTrackString() - Method in class org.molgenis.genomebrowser.GenomeBrowserTrack

TRACK_TYPE - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

U

URI - Static variable in class org.molgenis.genomebrowser.service.GenomeBrowserService

V

valueOf(String) - Static method in enum org.molgenis.genomebrowser.meta.GenomeBrowserSettings.MolgenisReferenceMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.genomebrowser.meta.GenomeBrowserSettings.TrackType

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.molgenis.genomebrowser.meta.GenomeBrowserSettings.MolgenisReferenceMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.genomebrowser.meta.GenomeBrowserSettings.TrackType

Returns an array containing the constants of this enum type, in the order they are declared.

VARIANT - Static variable in class org.molgenis.genomebrowser.meta.GenomeBrowserSettingsMetadata

A C D E F G I L M N O P R S T U V