Index (molgenis-omx-auth 0.0.1 API)

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A

AccessionService - Class in org.molgenis.service
AccessionService() - Constructor for class org.molgenis.service.AccessionService
AccountController - Class in org.molgenis.omx.auth.controller
AccountController() - Constructor for class org.molgenis.omx.auth.controller.AccountController
AccountService - Class in org.molgenis.omx.auth.service
AccountService() - Constructor for class org.molgenis.omx.auth.service.AccountService
Activate(Database, MolgenisRequest) - Method in class org.molgenis.omx.auth.ui.SimpleUserLogin
activateUser(String) - Method in class org.molgenis.omx.auth.controller.AccountController
activateUser(String) - Method in class org.molgenis.omx.auth.service.AccountService: Activate a registered user
ACTIVATIONCODE - Static variable in class org.molgenis.omx.auth.MolgenisUser
ACTIVE - Static variable in class org.molgenis.omx.auth.MolgenisUser
add(List<E>) - Method in class org.molgenis.omx.auth.decorators.MolgenisUserDecorator
addPermission(MolgenisRequest) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementPlugin: Insert (add) a permission based on request
ADDRESS - Static variable in class org.molgenis.omx.auth.Institute
ADDRESS - Static variable in class org.molgenis.omx.auth.MolgenisUser
ADDRESS - Static variable in class org.molgenis.omx.auth.Person
AddUser(Database, MolgenisRequest) - Method in class org.molgenis.omx.auth.ui.SimpleUserLogin
AFFILIATION - Static variable in class org.molgenis.omx.auth.MolgenisUser
AFFILIATION - Static variable in class org.molgenis.omx.auth.Person
AFFILIATION_NAME - Static variable in class org.molgenis.omx.auth.MolgenisUser
AFFILIATION_NAME - Static variable in class org.molgenis.omx.auth.Person
Authorizable - Interface in org.molgenis.omx.auth: Authorizable: Interface for row level security.
AuthtestGenerate - Class in org.molgenis.omx.auth: Generates the MOLGENIS application from the *db.xml and *ui.xml as set in molgenis.properties
AuthtestGenerate() - Constructor for class org.molgenis.omx.auth.AuthtestGenerate

B

BoolValueService - Class in org.molgenis.service
BoolValueService() - Constructor for class org.molgenis.service.BoolValueService

C

Cancel(Database, MolgenisRequest) - Method in class org.molgenis.omx.auth.ui.SimpleUserLogin
canRead(Class<? extends Entity>) - Method in class org.molgenis.omx.auth.DatabaseLogin
canRead(Entity) - Method in class org.molgenis.omx.auth.DatabaseLogin: Indicates whether the user has permissions to read data from this entity.
canRead(ScreenController<?>) - Method in class org.molgenis.omx.auth.DatabaseLogin
canReadScreenController(Class<? extends ScreenController<?>>) - Method in class org.molgenis.omx.auth.DatabaseLogin
canWrite(Class<? extends Entity>) - Method in class org.molgenis.omx.auth.DatabaseLogin
canWrite(Entity) - Method in class org.molgenis.omx.auth.DatabaseLogin: Indicates whether the user has permissions to write (and read) data from this entity.
CaptchaController - Class in org.molgenis.omx.auth.controller
CaptchaController() - Constructor for class org.molgenis.omx.auth.controller.CaptchaController
CaptchaRequest - Class in org.molgenis.omx.auth.vo
CaptchaRequest() - Constructor for class org.molgenis.omx.auth.vo.CaptchaRequest
CaptchaService - Class in org.molgenis.omx.auth.service
CaptchaService() - Constructor for class org.molgenis.omx.auth.service.CaptchaService
CaptchaService.CaptchaException - Exception in org.molgenis.omx.auth.service
CaptchaService.CaptchaException(String) - Constructor for exception org.molgenis.omx.auth.service.CaptchaService.CaptchaException
CategoricalValueService - Class in org.molgenis.service
CategoricalValueService() - Constructor for class org.molgenis.service.CategoricalValueService
CategoryService - Class in org.molgenis.service
CategoryService() - Constructor for class org.molgenis.service.CategoryService
CharacteristicService - Class in org.molgenis.service
CharacteristicService() - Constructor for class org.molgenis.service.CharacteristicService
checkPassword(String, String, String, String) - Method in class org.molgenis.omx.auth.service.MolgenisUserService
ChgUser(Database, MolgenisRequest) - Method in class org.molgenis.omx.auth.ui.SimpleUserLogin
CITY - Static variable in class org.molgenis.omx.auth.Institute
CITY - Static variable in class org.molgenis.omx.auth.MolgenisUser
CITY - Static variable in class org.molgenis.omx.auth.Person
Contact - Interface in org.molgenis.omx.auth: Contact: A contact is either a person or an organization.
COUNTRY - Static variable in class org.molgenis.omx.auth.Institute
COUNTRY - Static variable in class org.molgenis.omx.auth.MolgenisUser
COUNTRY - Static variable in class org.molgenis.omx.auth.Person
create(Institute) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper: This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
create() - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper
create(MolgenisGroup) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper: This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
create() - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
create(MolgenisPermission) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper: This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
create() - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
create(MolgenisRoleGroupLink) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper: This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
create() - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
create(MolgenisRole) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper: This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
create() - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
create(MolgenisUser) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper: This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
create() - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
create(Person) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper: This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
create() - Method in class org.molgenis.omx.auth.db.PersonJpaMapper
create(PersonRole) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper: This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
create() - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper
create(Tuple) - Method in class org.molgenis.omx.auth.Institute
create(Tuple) - Method in class org.molgenis.omx.auth.MolgenisGroup
create(Tuple) - Method in class org.molgenis.omx.auth.MolgenisPermission
create(Tuple) - Method in class org.molgenis.omx.auth.MolgenisRole
create(Tuple) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
create(Tuple) - Method in class org.molgenis.omx.auth.MolgenisUser
create(Tuple) - Method in class org.molgenis.omx.auth.Person
create(Tuple) - Method in class org.molgenis.omx.auth.PersonRole
create(Accession) - Method in class org.molgenis.service.AccessionService
create(BoolValue) - Method in class org.molgenis.service.BoolValueService
create(CategoricalValue) - Method in class org.molgenis.service.CategoricalValueService
create(Category) - Method in class org.molgenis.service.CategoryService
create(Characteristic) - Method in class org.molgenis.service.CharacteristicService
create(DataSet) - Method in class org.molgenis.service.DataSetService
create(DateTimeValue) - Method in class org.molgenis.service.DateTimeValueService
create(DateValue) - Method in class org.molgenis.service.DateValueService
create(DecimalValue) - Method in class org.molgenis.service.DecimalValueService
create(EmailValue) - Method in class org.molgenis.service.EmailValueService
create(HtmlValue) - Method in class org.molgenis.service.HtmlValueService
create(HyperlinkValue) - Method in class org.molgenis.service.HyperlinkValueService
create(Individual) - Method in class org.molgenis.service.IndividualService
create(Institute) - Method in class org.molgenis.service.InstituteService
create(IntValue) - Method in class org.molgenis.service.IntValueService
create(LongValue) - Method in class org.molgenis.service.LongValueService
create(MolgenisFile) - Method in class org.molgenis.service.MolgenisFileService
create(MrefValue) - Method in class org.molgenis.service.MrefValueService
create(ObservableFeature) - Method in class org.molgenis.service.ObservableFeatureService
create(ObservationSet) - Method in class org.molgenis.service.ObservationSetService
create(ObservationTarget) - Method in class org.molgenis.service.ObservationTargetService
create(ObservedValue) - Method in class org.molgenis.service.ObservedValueService
create(Ontology) - Method in class org.molgenis.service.OntologyService
create(OntologyTerm) - Method in class org.molgenis.service.OntologyTermService
create(Panel) - Method in class org.molgenis.service.PanelService
create(PanelSource) - Method in class org.molgenis.service.PanelSourceService
create(PersonRole) - Method in class org.molgenis.service.PersonRoleService
create(Person) - Method in class org.molgenis.service.PersonService
create(Protocol) - Method in class org.molgenis.service.ProtocolService
create(RuntimeProperty) - Method in class org.molgenis.service.RuntimePropertyService
create(Species) - Method in class org.molgenis.service.SpeciesService
create(StringValue) - Method in class org.molgenis.service.StringValueService
create(TextValue) - Method in class org.molgenis.service.TextValueService
create(Value) - Method in class org.molgenis.service.ValueService
create(XrefValue) - Method in class org.molgenis.service.XrefValueService
createCaptcha(int, int) - Method in class org.molgenis.omx.auth.service.CaptchaService
createFindSqlInclRules(QueryRule[]) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper
createFindSqlInclRules(QueryRule[]) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
createFindSqlInclRules(QueryRule[]) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
createFindSqlInclRules(QueryRule[]) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
createFindSqlInclRules(QueryRule[]) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
createFindSqlInclRules(QueryRule[]) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
createFindSqlInclRules(QueryRule[]) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper
createFindSqlInclRules(QueryRule[]) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper
createList(int) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper: Return EMPTY list of given allocated size
createList(int) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper: Return EMPTY list of given allocated size
createList(int) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper: Return EMPTY list of given allocated size
createList(int) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper: Return EMPTY list of given allocated size
createList(int) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper: Return EMPTY list of given allocated size
createList(int) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper: Return EMPTY list of given allocated size
createList(int) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper: Return EMPTY list of given allocated size
createList(int) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper: Return EMPTY list of given allocated size
createUser(MolgenisUser, URI) - Method in class org.molgenis.omx.auth.service.AccountService

D

DatabaseAuthenticationForm - Class in org.molgenis.omx.auth.ui.form
DatabaseAuthenticationForm() - Constructor for class org.molgenis.omx.auth.ui.form.DatabaseAuthenticationForm
DatabaseLogin - Class in org.molgenis.omx.auth
DatabaseLogin(TokenFactory) - Constructor for class org.molgenis.omx.auth.DatabaseLogin
DatabaseLogin(Database, TokenFactory) - Constructor for class org.molgenis.omx.auth.DatabaseLogin: Constructor used to login anonymous
DatabaseLogin(Database, String, TokenFactory) - Constructor for class org.molgenis.omx.auth.DatabaseLogin
DataSetService - Class in org.molgenis.service
DataSetService() - Constructor for class org.molgenis.service.DataSetService
DateTimeValueService - Class in org.molgenis.service
DateTimeValueService() - Constructor for class org.molgenis.service.DateTimeValueService
DateValueService - Class in org.molgenis.service
DateValueService() - Constructor for class org.molgenis.service.DateValueService
DecimalValueService - Class in org.molgenis.service
DecimalValueService() - Constructor for class org.molgenis.service.DecimalValueService
deleteById(Integer) - Method in class org.molgenis.service.AccessionService
deleteById(Integer) - Method in class org.molgenis.service.BoolValueService
deleteById(Integer) - Method in class org.molgenis.service.CategoricalValueService
deleteById(Integer) - Method in class org.molgenis.service.CategoryService
deleteById(Integer) - Method in class org.molgenis.service.CharacteristicService
deleteById(Integer) - Method in class org.molgenis.service.DataSetService
deleteById(Integer) - Method in class org.molgenis.service.DateTimeValueService
deleteById(Integer) - Method in class org.molgenis.service.DateValueService
deleteById(Integer) - Method in class org.molgenis.service.DecimalValueService
deleteById(Integer) - Method in class org.molgenis.service.EmailValueService
deleteById(Integer) - Method in class org.molgenis.service.HtmlValueService
deleteById(Integer) - Method in class org.molgenis.service.HyperlinkValueService
deleteById(Integer) - Method in class org.molgenis.service.IndividualService
deleteById(Integer) - Method in class org.molgenis.service.InstituteService
deleteById(Integer) - Method in class org.molgenis.service.IntValueService
deleteById(Integer) - Method in class org.molgenis.service.LongValueService
deleteById(Integer) - Method in class org.molgenis.service.MolgenisFileService
deleteById(Integer) - Method in class org.molgenis.service.MrefValueService
deleteById(Integer) - Method in class org.molgenis.service.ObservableFeatureService
deleteById(Integer) - Method in class org.molgenis.service.ObservationSetService
deleteById(Integer) - Method in class org.molgenis.service.ObservationTargetService
deleteById(Integer) - Method in class org.molgenis.service.ObservedValueService
deleteById(Integer) - Method in class org.molgenis.service.OntologyService
deleteById(Integer) - Method in class org.molgenis.service.OntologyTermService
deleteById(Integer) - Method in class org.molgenis.service.PanelService
deleteById(Integer) - Method in class org.molgenis.service.PanelSourceService
deleteById(Integer) - Method in class org.molgenis.service.PersonRoleService
deleteById(Integer) - Method in class org.molgenis.service.PersonService
deleteById(Integer) - Method in class org.molgenis.service.ProtocolService
deleteById(Integer) - Method in class org.molgenis.service.RuntimePropertyService
deleteById(Integer) - Method in class org.molgenis.service.SpeciesService
deleteById(Integer) - Method in class org.molgenis.service.StringValueService
deleteById(Integer) - Method in class org.molgenis.service.TextValueService
deleteById(Integer) - Method in class org.molgenis.service.ValueService
deleteById(Integer) - Method in class org.molgenis.service.XrefValueService
DEPARTMENT - Static variable in class org.molgenis.omx.auth.MolgenisUser
DEPARTMENT - Static variable in class org.molgenis.omx.auth.Person
destroy(Institute) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper
destroy(MolgenisGroup) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
destroy(MolgenisPermission) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
destroy(MolgenisRoleGroupLink) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
destroy(MolgenisRole) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
destroy(MolgenisUser) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
destroy(Person) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper
destroy(PersonRole) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper

E

edit(Institute) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper
edit(MolgenisGroup) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
edit(MolgenisPermission) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
edit(MolgenisRoleGroupLink) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
edit(MolgenisRole) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
edit(MolgenisUser) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
edit(Person) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper
edit(PersonRole) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper
EMAIL - Static variable in class org.molgenis.omx.auth.Institute
EMAIL - Static variable in class org.molgenis.omx.auth.MolgenisUser
EMAIL - Static variable in class org.molgenis.omx.auth.Person
EmailValueService - Class in org.molgenis.service
EmailValueService() - Constructor for class org.molgenis.service.EmailValueService
ENTITY - Static variable in class org.molgenis.omx.auth.MolgenisPermission
ENTITY_CLASSNAME - Static variable in class org.molgenis.omx.auth.MolgenisPermission
equals(Object) - Method in class org.molgenis.omx.auth.Institute
equals(Object) - Method in class org.molgenis.omx.auth.MolgenisGroup
equals(Object) - Method in class org.molgenis.omx.auth.MolgenisPermission
equals(Object) - Method in class org.molgenis.omx.auth.MolgenisRole
equals(Object) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
equals(Object) - Method in class org.molgenis.omx.auth.MolgenisUser
equals(Object) - Method in class org.molgenis.omx.auth.Person
equals(Object) - Method in class org.molgenis.omx.auth.PersonRole
executeAdd(List<? extends Institute>) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper
executeAdd(List<? extends MolgenisGroup>) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
executeAdd(List<? extends MolgenisPermission>) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
executeAdd(List<? extends MolgenisRoleGroupLink>) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
executeAdd(List<? extends MolgenisRole>) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
executeAdd(List<? extends MolgenisUser>) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
executeAdd(List<? extends Person>) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper
executeAdd(List<? extends PersonRole>) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper
executeRemove(List<? extends Institute>) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper
executeRemove(List<? extends MolgenisGroup>) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
executeRemove(List<? extends MolgenisPermission>) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
executeRemove(List<? extends MolgenisRoleGroupLink>) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
executeRemove(List<? extends MolgenisRole>) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
executeRemove(List<? extends MolgenisUser>) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
executeRemove(List<? extends Person>) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper
executeRemove(List<? extends PersonRole>) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper
executeUpdate(List<? extends Institute>) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper
executeUpdate(List<? extends MolgenisGroup>) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
executeUpdate(List<? extends MolgenisPermission>) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
executeUpdate(List<? extends MolgenisRoleGroupLink>) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
executeUpdate(List<? extends MolgenisRole>) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
executeUpdate(List<? extends MolgenisUser>) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
executeUpdate(List<? extends Person>) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper
executeUpdate(List<? extends PersonRole>) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper
exists(MolgenisPermission) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Check to see if a given permission exists

F

FAX - Static variable in class org.molgenis.omx.auth.Institute
FAX - Static variable in class org.molgenis.omx.auth.MolgenisUser
FAX - Static variable in class org.molgenis.omx.auth.Person
find(Database, QueryRule...) - Static method in class org.molgenis.omx.auth.Institute: Shorthand for db.find(Institute.class, org.molgenis.framework.db.QueryRule ...
find(Database, QueryRule...) - Static method in class org.molgenis.omx.auth.MolgenisGroup: Shorthand for db.find(MolgenisGroup.class, org.molgenis.framework.db.QueryRule ...
find(Database, QueryRule...) - Static method in class org.molgenis.omx.auth.MolgenisPermission: Shorthand for db.find(MolgenisPermission.class, org.molgenis.framework.db.QueryRule ...
find(Database, QueryRule...) - Static method in class org.molgenis.omx.auth.MolgenisRole: Shorthand for db.find(MolgenisRole.class, org.molgenis.framework.db.QueryRule ...
find(Database, QueryRule...) - Static method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Shorthand for db.find(MolgenisRoleGroupLink.class, org.molgenis.framework.db.QueryRule ...
find(Database, QueryRule...) - Static method in class org.molgenis.omx.auth.MolgenisUser: Shorthand for db.find(MolgenisUser.class, org.molgenis.framework.db.QueryRule ...
find(Database, QueryRule...) - Static method in class org.molgenis.omx.auth.Person: Shorthand for db.find(Person.class, org.molgenis.framework.db.QueryRule ...
find(Database, QueryRule...) - Static method in class org.molgenis.omx.auth.PersonRole: Shorthand for db.find(PersonRole.class, org.molgenis.framework.db.QueryRule ...
find(MolgenisUserSearchCriteriaVO) - Method in class org.molgenis.omx.auth.service.MolgenisUserService
findAdminEmail() - Method in class org.molgenis.omx.auth.service.MolgenisUserService
findByEmail(Database, String) - Static method in class org.molgenis.omx.auth.MolgenisUser
findByEmail(Database, String) - Static method in class org.molgenis.omx.auth.Person
findByGroupRole(Database, Integer, Integer) - Static method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
findById(Database, Integer) - Static method in class org.molgenis.omx.auth.Institute
findById(Database, Integer) - Static method in class org.molgenis.omx.auth.MolgenisGroup
findById(Database, Integer) - Static method in class org.molgenis.omx.auth.MolgenisPermission
findById(Database, Integer) - Static method in class org.molgenis.omx.auth.MolgenisRole
findById(Database, Integer) - Static method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
findById(Database, Integer) - Static method in class org.molgenis.omx.auth.MolgenisUser
findById(Database, Integer) - Static method in class org.molgenis.omx.auth.Person
findById(Database, Integer) - Static method in class org.molgenis.omx.auth.PersonRole
findById(Integer) - Method in class org.molgenis.omx.auth.service.MolgenisUserService
findByIdentifier(Database, String) - Static method in class org.molgenis.omx.auth.Institute
findByIdentifier(Database, String) - Static method in class org.molgenis.omx.auth.MolgenisGroup
findByIdentifier(Database, String) - Static method in class org.molgenis.omx.auth.MolgenisPermission
findByIdentifier(Database, String) - Static method in class org.molgenis.omx.auth.MolgenisRole
findByIdentifier(Database, String) - Static method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
findByIdentifier(Database, String) - Static method in class org.molgenis.omx.auth.MolgenisUser
findByIdentifier(Database, String) - Static method in class org.molgenis.omx.auth.Person
findByIdentifier(Database, String) - Static method in class org.molgenis.omx.auth.PersonRole
findByName(Database, String) - Static method in class org.molgenis.omx.auth.Institute
findByName(Database, String) - Static method in class org.molgenis.omx.auth.MolgenisGroup
findByName(Database, String) - Static method in class org.molgenis.omx.auth.MolgenisRole
findByName(Database, String) - Static method in class org.molgenis.omx.auth.MolgenisUser
findByOntologyTermAccession(Database, Integer, String) - Static method in class org.molgenis.omx.auth.PersonRole
findByRoleEntityPermission(Database, Integer, Integer, String) - Static method in class org.molgenis.omx.auth.MolgenisPermission
findEntities() - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Find all Molgenis Users
findEntity(Integer) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Find a MolgenisEntity by id
findGroupIds(MolgenisRole) - Method in class org.molgenis.omx.auth.service.MolgenisUserService: Get a list of group ids for the groups a user is member of
findPermission(Integer) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Finds permission based on a MolgenisPermission id
findPermissions(Integer) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Given a role id, finds all MolgenisPermissions for the role.
findPermissions(Integer, Integer) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Given a role id and an entity id, searches for a MolgenisPermission on a particular entity for the given role.
findPermissions(Integer, Integer, String) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Given a role id, entity id, and a permission type, check to see whether a MolgenisPermission exists
findPermissions(Integer, String) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Given a role id and a permission type (i.e.
findRole(Integer) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Find a MolgenisUser
findRoles() - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Find all Molgenis Users
findUserPermissions(Integer, boolean) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Given a role id, return a list of MolgenisPermissions for all users, where the given roleId owns the entity in the matched MolgenisPermissions.
findUserPermissions(Integer, Integer) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Given a role id and an entity id, return a list of MolgenisPermissions for all users, where the given roleId owns the entity in the matched MolgenisPermissions (and only the entity passed in).
FIRSTNAME - Static variable in class org.molgenis.omx.auth.MolgenisUser
FIRSTNAME - Static variable in class org.molgenis.omx.auth.Person
Forgot(Database, MolgenisRequest) - Method in class org.molgenis.omx.auth.ui.SimpleUserLogin
ForgotForm - Class in org.molgenis.omx.auth.ui.form
ForgotForm() - Constructor for class org.molgenis.omx.auth.ui.form.ForgotForm

G

get(String) - Method in class org.molgenis.omx.auth.Institute: Generic getter.
get(String) - Method in class org.molgenis.omx.auth.MolgenisGroup: Generic getter.
get(String) - Method in class org.molgenis.omx.auth.MolgenisPermission: Generic getter.
get(String) - Method in class org.molgenis.omx.auth.MolgenisRole: Generic getter.
get(String) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Generic getter.
get(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Generic getter.
get(String) - Method in class org.molgenis.omx.auth.Person: Generic getter.
get(String) - Method in class org.molgenis.omx.auth.PersonRole: Generic getter.
get__Type() - Method in class org.molgenis.omx.auth.MolgenisRole: Get the Subtypes have to be set to allow searching.
get__Type(Database) - Method in class org.molgenis.omx.auth.MolgenisRole: Deprecated.
get__TypeLabel() - Method in class org.molgenis.omx.auth.MolgenisRole: Get tha label for enum __Type.
get__TypeOptions() - Method in class org.molgenis.omx.auth.MolgenisRole: __Type is enum.
getAction() - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementModel
getAction() - Method in class org.molgenis.omx.auth.ui.SimpleUserLoginModel
getActivationCode() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the Used as alternative authentication mechanism to verify user email and/or if user has lost password..
getActivationCode(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getActivationCode() - Method in class org.molgenis.omx.auth.vo.MolgenisUserSearchCriteriaVO
getActive() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the Boolean to indicate if this account can be used to login.
getActive(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getAddress() - Method in interface org.molgenis.omx.auth.Contact
getAddress() - Method in class org.molgenis.omx.auth.Institute: Get the The address of the Contact..
getAddress(Database) - Method in class org.molgenis.omx.auth.Institute: Deprecated.
getAddress() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the The address of the Contact..
getAddress(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getAddress() - Method in class org.molgenis.omx.auth.Person: Get the The address of the Contact..
getAddress(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getAddress() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getAffiliation() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the Affiliation.
getAffiliation(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getAffiliation() - Method in class org.molgenis.omx.auth.Person: Get the Affiliation.
getAffiliation(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getAffiliation() - Method in interface org.molgenis.omx.auth.PersonContact
getAffiliation_Id() - Method in class org.molgenis.omx.auth.MolgenisUser
getAffiliation_Id() - Method in class org.molgenis.omx.auth.Person
getAffiliation_Id() - Method in interface org.molgenis.omx.auth.PersonContact
getAffiliation_Name() - Method in class org.molgenis.omx.auth.MolgenisUser: Get a pretty label Name for cross reference Affiliation to Institute.Id.
getAffiliation_Name() - Method in class org.molgenis.omx.auth.Person: Get a pretty label Name for cross reference Affiliation to Institute.Id.
getAffiliation_Name() - Method in interface org.molgenis.omx.auth.PersonContact
getAuthenticationForm() - Method in class org.molgenis.omx.auth.ui.SimpleUserLoginModel
getCanRead() - Method in interface org.molgenis.omx.auth.Authorizable
getCanRead_Id() - Method in interface org.molgenis.omx.auth.Authorizable
getCanRead_Name() - Method in interface org.molgenis.omx.auth.Authorizable
getCanWrite() - Method in interface org.molgenis.omx.auth.Authorizable
getCanWrite_Id() - Method in interface org.molgenis.omx.auth.Authorizable
getCanWrite_Name() - Method in interface org.molgenis.omx.auth.Authorizable
getCaptcha() - Method in class org.molgenis.omx.auth.controller.CaptchaController
getCaptcha() - Method in class org.molgenis.omx.auth.vo.CaptchaRequest
getCity() - Method in interface org.molgenis.omx.auth.Contact
getCity() - Method in class org.molgenis.omx.auth.Institute: Get the Added from the old definition of MolgenisUser.
getCity(Database) - Method in class org.molgenis.omx.auth.Institute: Deprecated.
getCity() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the Added from the old definition of MolgenisUser.
getCity(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getCity() - Method in class org.molgenis.omx.auth.Person: Get the Added from the old definition of MolgenisUser.
getCity(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getCity() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getConfirmPassword() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getCountry() - Method in interface org.molgenis.omx.auth.Contact
getCountry() - Method in class org.molgenis.omx.auth.Institute: Get the Added from the old definition of MolgenisUser.
getCountry(Database) - Method in class org.molgenis.omx.auth.Institute: Deprecated.
getCountry() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the Added from the old definition of MolgenisUser.
getCountry(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getCountry() - Method in class org.molgenis.omx.auth.Person: Get the Added from the old definition of MolgenisUser.
getCountry(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getCountry() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getCustomHtmlHeaders() - Method in class org.molgenis.omx.auth.ui.SimpleUserLogin
getDepartment() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the Added from the old definition of MolgenisUser.
getDepartment(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getDepartment() - Method in class org.molgenis.omx.auth.Person: Get the Added from the old definition of MolgenisUser.
getDepartment(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getDepartment() - Method in interface org.molgenis.omx.auth.PersonContact
getDepartment() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getEmail() - Method in interface org.molgenis.omx.auth.Contact
getEmail() - Method in class org.molgenis.omx.auth.Institute: Get the The email address of the Contact..
getEmail(Database) - Method in class org.molgenis.omx.auth.Institute: Deprecated.
getEmail() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the The email address of the Contact..
getEmail(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getEmail() - Method in class org.molgenis.omx.auth.Person: Get the The email address of the Contact..
getEmail(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getEmail() - Method in class org.molgenis.omx.auth.vo.PasswordResetRequest
getEmail() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getEntity() - Method in class org.molgenis.omx.auth.MolgenisPermission: Get the entity.
getEntity(Database) - Method in class org.molgenis.omx.auth.MolgenisPermission: Deprecated.
getEntity() - Method in class org.molgenis.service.AccessionService
getEntity() - Method in class org.molgenis.service.BoolValueService
getEntity() - Method in class org.molgenis.service.CategoricalValueService
getEntity() - Method in class org.molgenis.service.CategoryService
getEntity() - Method in class org.molgenis.service.CharacteristicService
getEntity() - Method in class org.molgenis.service.DataSetService
getEntity() - Method in class org.molgenis.service.DateTimeValueService
getEntity() - Method in class org.molgenis.service.DateValueService
getEntity() - Method in class org.molgenis.service.DecimalValueService
getEntity() - Method in class org.molgenis.service.EmailValueService
getEntity() - Method in class org.molgenis.service.HtmlValueService
getEntity() - Method in class org.molgenis.service.HyperlinkValueService
getEntity() - Method in class org.molgenis.service.IndividualService
getEntity() - Method in class org.molgenis.service.InstituteService
getEntity() - Method in class org.molgenis.service.IntValueService
getEntity() - Method in class org.molgenis.service.LongValueService
getEntity() - Method in class org.molgenis.service.MolgenisFileService
getEntity() - Method in class org.molgenis.service.MrefValueService
getEntity() - Method in class org.molgenis.service.ObservableFeatureService
getEntity() - Method in class org.molgenis.service.ObservationSetService
getEntity() - Method in class org.molgenis.service.ObservationTargetService
getEntity() - Method in class org.molgenis.service.ObservedValueService
getEntity() - Method in class org.molgenis.service.OntologyService
getEntity() - Method in class org.molgenis.service.OntologyTermService
getEntity() - Method in class org.molgenis.service.PanelService
getEntity() - Method in class org.molgenis.service.PanelSourceService
getEntity() - Method in class org.molgenis.service.PersonRoleService
getEntity() - Method in class org.molgenis.service.PersonService
getEntity() - Method in class org.molgenis.service.ProtocolService
getEntity() - Method in class org.molgenis.service.RuntimePropertyService
getEntity() - Method in class org.molgenis.service.SpeciesService
getEntity() - Method in class org.molgenis.service.StringValueService
getEntity() - Method in class org.molgenis.service.TextValueService
getEntity() - Method in class org.molgenis.service.ValueService
getEntity() - Method in class org.molgenis.service.XrefValueService
getEntity_ClassName() - Method in class org.molgenis.omx.auth.MolgenisPermission: Get a pretty label className for cross reference Entity to MolgenisEntity.Id.
getEntity_Id() - Method in class org.molgenis.omx.auth.MolgenisPermission
getEntityClass() - Method in class org.molgenis.omx.auth.ui.InstituteForm
getEntityClass() - Method in class org.molgenis.omx.auth.ui.MolgenisGroupForm
getEntityClass() - Method in class org.molgenis.omx.auth.ui.MolgenisPermissionForm
getEntityClass() - Method in class org.molgenis.omx.auth.ui.MolgenisRoleForm
getEntityClass() - Method in class org.molgenis.omx.auth.ui.MolgenisRoleGroupLinkForm
getEntityClass() - Method in class org.molgenis.omx.auth.ui.MolgenisUserForm
getEntityClass() - Method in class org.molgenis.omx.auth.ui.PersonForm
getEntityClass() - Method in class org.molgenis.omx.auth.ui.PersonRoleForm
getFax() - Method in interface org.molgenis.omx.auth.Contact
getFax() - Method in class org.molgenis.omx.auth.Institute: Get the The fax number of the Contact..
getFax(Database) - Method in class org.molgenis.omx.auth.Institute: Deprecated.
getFax() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the The fax number of the Contact..
getFax(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getFax() - Method in class org.molgenis.omx.auth.Person: Get the The fax number of the Contact..
getFax(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getFax() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getFields(boolean) - Method in class org.molgenis.omx.auth.Institute: Get the names of all public properties of Institute.
getFields() - Method in class org.molgenis.omx.auth.Institute
getFields(String) - Method in class org.molgenis.omx.auth.Institute: Deprecated.
getFields(boolean) - Method in class org.molgenis.omx.auth.MolgenisGroup: Get the names of all public properties of MolgenisGroup.
getFields() - Method in class org.molgenis.omx.auth.MolgenisGroup
getFields(String) - Method in class org.molgenis.omx.auth.MolgenisGroup: Deprecated.
getFields(boolean) - Method in class org.molgenis.omx.auth.MolgenisPermission: Get the names of all public properties of MolgenisPermission.
getFields() - Method in class org.molgenis.omx.auth.MolgenisPermission
getFields(String) - Method in class org.molgenis.omx.auth.MolgenisPermission: Deprecated.
getFields(boolean) - Method in class org.molgenis.omx.auth.MolgenisRole: Get the names of all public properties of MolgenisRole.
getFields() - Method in class org.molgenis.omx.auth.MolgenisRole
getFields(String) - Method in class org.molgenis.omx.auth.MolgenisRole: Deprecated.
getFields(boolean) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Get the names of all public properties of MolgenisRoleGroupLink.
getFields() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
getFields(String) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Deprecated.
getFields(boolean) - Method in class org.molgenis.omx.auth.MolgenisUser: Get the names of all public properties of MolgenisUser.
getFields() - Method in class org.molgenis.omx.auth.MolgenisUser
getFields(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getFields(boolean) - Method in class org.molgenis.omx.auth.Person: Get the names of all public properties of Person.
getFields() - Method in class org.molgenis.omx.auth.Person
getFields(String) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getFields(boolean) - Method in class org.molgenis.omx.auth.PersonRole: Get the names of all public properties of PersonRole.
getFields() - Method in class org.molgenis.omx.auth.PersonRole
getFields(String) - Method in class org.molgenis.omx.auth.PersonRole: Deprecated.
getFieldType(String) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper
getFieldType(String) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
getFieldType(String) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
getFieldType(String) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
getFieldType(String) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
getFieldType(String) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
getFieldType(String) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper
getFieldType(String) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper
getFirstName() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the First Name.
getFirstName(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getFirstName() - Method in class org.molgenis.omx.auth.Person: Get the First Name.
getFirstName(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getFirstName() - Method in interface org.molgenis.omx.auth.PersonContact
getFirstname() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getForgotForm() - Method in class org.molgenis.omx.auth.ui.SimpleUserLoginModel
getFullUserName() - Method in class org.molgenis.omx.auth.DatabaseLogin
getGroup() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Get the group_.
getGroup(Database) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Deprecated.
getGroup_Id() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
getGroup_Name() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Get a pretty label Name for cross reference Group to MolgenisGroup.Id.
getGroupList() - Method in class org.molgenis.omx.auth.service.persontouser.PersonToUserModel
getHeaders() - Method in class org.molgenis.omx.auth.ui.InstituteForm
getHeaders() - Method in class org.molgenis.omx.auth.ui.MolgenisGroupForm
getHeaders() - Method in class org.molgenis.omx.auth.ui.MolgenisPermissionForm
getHeaders() - Method in class org.molgenis.omx.auth.ui.MolgenisRoleForm
getHeaders() - Method in class org.molgenis.omx.auth.ui.MolgenisRoleGroupLinkForm
getHeaders() - Method in class org.molgenis.omx.auth.ui.MolgenisUserForm
getHeaders() - Method in class org.molgenis.omx.auth.ui.PersonForm
getHeaders() - Method in class org.molgenis.omx.auth.ui.PersonRoleForm
getId() - Method in class org.molgenis.omx.auth.MolgenisPermission: Get the automatically generated internal id, only for internal use..
getId() - Method in class org.molgenis.omx.auth.MolgenisRole: Get the automatically generated internal id, only for internal use..
getId() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Get the automatically generated internal id, only for internal use..
getIdentifier() - Method in class org.molgenis.omx.auth.MolgenisPermission: Get the user supplied or automatically assigned (using a decorator) unique and short identifier, e.g.
getIdentifier(Database) - Method in class org.molgenis.omx.auth.MolgenisPermission: Deprecated.
getIdentifier() - Method in class org.molgenis.omx.auth.MolgenisRole: Get the user supplied or automatically assigned (using a decorator) unique and short identifier, e.g.
getIdentifier(Database) - Method in class org.molgenis.omx.auth.MolgenisRole: Deprecated.
getIdentifier() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Get the user supplied or automatically assigned (using a decorator) unique and short identifier, e.g.
getIdentifier(Database) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Deprecated.
getIdField() - Method in class org.molgenis.omx.auth.Institute
getIdField() - Method in class org.molgenis.omx.auth.MolgenisGroup
getIdField() - Method in class org.molgenis.omx.auth.MolgenisPermission
getIdField() - Method in class org.molgenis.omx.auth.MolgenisRole
getIdField() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
getIdField() - Method in class org.molgenis.omx.auth.MolgenisUser
getIdField() - Method in class org.molgenis.omx.auth.Person
getIdField() - Method in class org.molgenis.omx.auth.PersonRole
getIdValue() - Method in class org.molgenis.omx.auth.Institute
getIdValue() - Method in class org.molgenis.omx.auth.MolgenisGroup
getIdValue() - Method in class org.molgenis.omx.auth.MolgenisPermission
getIdValue() - Method in class org.molgenis.omx.auth.MolgenisRole
getIdValue() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
getIdValue() - Method in class org.molgenis.omx.auth.MolgenisUser
getIdValue() - Method in class org.molgenis.omx.auth.Person
getIdValue() - Method in class org.molgenis.omx.auth.PersonRole
getInputs() - Method in class org.molgenis.omx.auth.ui.InstituteForm
getInputs() - Method in class org.molgenis.omx.auth.ui.MolgenisGroupForm
getInputs() - Method in class org.molgenis.omx.auth.ui.MolgenisPermissionForm
getInputs() - Method in class org.molgenis.omx.auth.ui.MolgenisRoleForm
getInputs() - Method in class org.molgenis.omx.auth.ui.MolgenisRoleGroupLinkForm
getInputs() - Method in class org.molgenis.omx.auth.ui.MolgenisUserForm
getInputs() - Method in class org.molgenis.omx.auth.ui.PersonForm
getInputs() - Method in class org.molgenis.omx.auth.ui.PersonRoleForm
getInputs() - Method in class plugin.topmenu.LoginScreen
getInstance(Database) - Static method in class org.molgenis.omx.auth.service.MolgenisUserService: Get an instance of MolgenisUserService
getInstance() - Static method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Get an instance of PermissionManagementService
getInstitute() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getLabel() - Method in class org.molgenis.omx.auth.ui.SimpleUserLoginModel
getLabelFields() - Method in class org.molgenis.omx.auth.Institute
getLabelFields() - Method in class org.molgenis.omx.auth.MolgenisGroup
getLabelFields() - Method in class org.molgenis.omx.auth.MolgenisPermission
getLabelFields() - Method in class org.molgenis.omx.auth.MolgenisRole
getLabelFields() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
getLabelFields() - Method in class org.molgenis.omx.auth.MolgenisUser
getLabelFields() - Method in class org.molgenis.omx.auth.Person
getLabelFields() - Method in class org.molgenis.omx.auth.PersonRole
getLastName() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the Last Name.
getLastName(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getLastName() - Method in class org.molgenis.omx.auth.Person: Get the Last Name.
getLastName(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getLastName() - Method in interface org.molgenis.omx.auth.PersonContact
getLastname() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getLoginForm() - Method in class org.molgenis.omx.auth.controller.AccountController
getMailCurator() - Method in class org.molgenis.omx.auth.ui.SimpleUserLoginModel
getMessage() - Method in exception org.molgenis.omx.auth.service.MolgenisUserException
getMidInitials() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the Mid Initials.
getMidInitials(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getMidInitials() - Method in class org.molgenis.omx.auth.Person: Get the Mid Initials.
getMidInitials(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getMidInitials() - Method in interface org.molgenis.omx.auth.PersonContact
getMyModel() - Method in class org.molgenis.omx.auth.service.persontouser.PersonToUser
getMyModel() - Method in class org.molgenis.omx.auth.service.tokenmanager.TokenManager
getName() - Method in class org.molgenis.omx.auth.Institute: Get the Name.
getName(Database) - Method in class org.molgenis.omx.auth.Institute: Deprecated.
getName() - Method in class org.molgenis.omx.auth.MolgenisPermission: Get the human readible name, not necessary unique..
getName(Database) - Method in class org.molgenis.omx.auth.MolgenisPermission: Deprecated.
getName() - Method in class org.molgenis.omx.auth.MolgenisRole: Get the Name.
getName(Database) - Method in class org.molgenis.omx.auth.MolgenisRole: Deprecated.
getName() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Get the human readible name, not necessary unique..
getName(Database) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Deprecated.
getName() - Method in class org.molgenis.omx.auth.vo.MolgenisUserSearchCriteriaVO
getOwns() - Method in interface org.molgenis.omx.auth.Authorizable
getOwns_Id() - Method in interface org.molgenis.omx.auth.Authorizable
getOwns_Name() - Method in interface org.molgenis.omx.auth.Authorizable
getPassword() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the big fixme: password type.
getPassword(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getPassword() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getPasswordResetForm() - Method in class org.molgenis.omx.auth.controller.AccountController
getPermId() - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementModel
getPermission() - Method in class org.molgenis.omx.auth.MolgenisPermission: Get the permission.
getPermission(Database) - Method in class org.molgenis.omx.auth.MolgenisPermission: Deprecated.
getPermissionLabel() - Method in class org.molgenis.omx.auth.MolgenisPermission: Get tha label for enum Permission.
getPermissionOptions() - Method in class org.molgenis.omx.auth.MolgenisPermission: Permission is enum.
getPersonList() - Method in class org.molgenis.omx.auth.service.persontouser.PersonToUserModel
getPhone() - Method in interface org.molgenis.omx.auth.Contact
getPhone() - Method in class org.molgenis.omx.auth.Institute: Get the The telephone number of the Contact including the suitable area codes..
getPhone(Database) - Method in class org.molgenis.omx.auth.Institute: Deprecated.
getPhone() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the The telephone number of the Contact including the suitable area codes..
getPhone(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getPhone() - Method in class org.molgenis.omx.auth.Person: Get the The telephone number of the Contact including the suitable area codes..
getPhone(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getPhone() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getPosition() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getRedirect() - Method in class org.molgenis.omx.auth.DatabaseLogin
getRegisterForm() - Method in class org.molgenis.omx.auth.controller.AccountController
getRegistrationForm() - Method in class org.molgenis.omx.auth.ui.UserLoginModel
getRole() - Method in class org.molgenis.omx.auth.MolgenisPermission: Get the role_.
getRole(Database) - Method in class org.molgenis.omx.auth.MolgenisPermission: Deprecated.
getRole() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Get the role_.
getRole(Database) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Deprecated.
getRole() - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementModel
getRole_Id() - Method in class org.molgenis.omx.auth.MolgenisPermission
getRole_Id() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
getRole_Name() - Method in class org.molgenis.omx.auth.MolgenisPermission: Get a pretty label Name for cross reference Role to MolgenisRole.Id.
getRole_Name() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Get a pretty label Name for cross reference Role to MolgenisRole.Id.
getRoles() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the Indicate role of the contact, e.g.
getRoles(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getRoles() - Method in class org.molgenis.omx.auth.Person: Get the Indicate role of the contact, e.g.
getRoles(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getRoles() - Method in interface org.molgenis.omx.auth.PersonContact
getRoles_Id() - Method in class org.molgenis.omx.auth.MolgenisUser
getRoles_Id() - Method in class org.molgenis.omx.auth.Person
getRoles_Id() - Method in interface org.molgenis.omx.auth.PersonContact
getRoles_Identifier() - Method in class org.molgenis.omx.auth.MolgenisUser: Get a pretty label Identifier for cross reference Roles to PersonRole.Id.
getRoles_Identifier() - Method in class org.molgenis.omx.auth.Person: Get a pretty label Identifier for cross reference Roles to PersonRole.Id.
getRoles_Identifier() - Method in interface org.molgenis.omx.auth.PersonContact
getRowlevelSecurityFilters(Class<? extends Entity>) - Method in class org.molgenis.omx.auth.DatabaseLogin: Deprecated.
getService() - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementPlugin
getSuperuser() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the superuser.
getSuperuser(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getTableFieldName(String) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper
getTableFieldName(String) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
getTableFieldName(String) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
getTableFieldName(String) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
getTableFieldName(String) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
getTableFieldName(String) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
getTableFieldName(String) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper
getTableFieldName(String) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper
getTitle() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the An academic title, e.g.
getTitle(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getTitle() - Method in class org.molgenis.omx.auth.Person: Get the An academic title, e.g.
getTitle(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getTitle() - Method in interface org.molgenis.omx.auth.PersonContact
getTitle() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getTokens() - Method in class org.molgenis.omx.auth.service.tokenmanager.TokenManagerModel
getTollFreePhone() - Method in interface org.molgenis.omx.auth.Contact
getTollFreePhone() - Method in class org.molgenis.omx.auth.Institute: Get the A toll free phone number for the Contact, including suitable area codes..
getTollFreePhone(Database) - Method in class org.molgenis.omx.auth.Institute: Deprecated.
getTollFreePhone() - Method in class org.molgenis.omx.auth.MolgenisUser: Get the A toll free phone number for the Contact, including suitable area codes..
getTollFreePhone(Database) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getTollFreePhone() - Method in class org.molgenis.omx.auth.Person: Get the A toll free phone number for the Contact, including suitable area codes..
getTollFreePhone(Database) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getTollFreePhone() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getUserAreaForm() - Method in class org.molgenis.omx.auth.ui.SimpleUserLoginModel
getUserId() - Method in class org.molgenis.omx.auth.DatabaseLogin
getUserName() - Method in class org.molgenis.omx.auth.DatabaseLogin
getUsername() - Method in class org.molgenis.omx.auth.vo.RegisterRequest
getValues(String) - Method in class org.molgenis.omx.auth.Institute: Deprecated.
getValues(String) - Method in class org.molgenis.omx.auth.MolgenisGroup: Deprecated.
getValues(String) - Method in class org.molgenis.omx.auth.MolgenisPermission: Deprecated.
getValues(String) - Method in class org.molgenis.omx.auth.MolgenisRole: Deprecated.
getValues(String) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Deprecated.
getValues(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Deprecated.
getValues(String) - Method in class org.molgenis.omx.auth.Person: Deprecated.
getValues(String) - Method in class org.molgenis.omx.auth.PersonRole: Deprecated.
getVarmodel() - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementPlugin
getView() - Method in class org.molgenis.omx.auth.ui.SimpleUserLogin
getViewName() - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementPlugin
getViewName() - Method in class org.molgenis.omx.auth.service.persontouser.PersonToUser
getViewName() - Method in class org.molgenis.omx.auth.service.tokenmanager.TokenManager
getViewName() - Method in class plugin.topmenu.LoginScreen
getViewTemplate() - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementPlugin
getViewTemplate() - Method in class org.molgenis.omx.auth.service.persontouser.PersonToUser
getViewTemplate() - Method in class org.molgenis.omx.auth.service.tokenmanager.TokenManager
getViewTemplate() - Method in class plugin.topmenu.LoginScreen
getXrefIdFieldName(String) - Method in class org.molgenis.omx.auth.Institute
getXrefIdFieldName(String) - Method in class org.molgenis.omx.auth.MolgenisGroup
getXrefIdFieldName(String) - Method in class org.molgenis.omx.auth.MolgenisPermission
getXrefIdFieldName(String) - Method in class org.molgenis.omx.auth.MolgenisRole
getXrefIdFieldName(String) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
getXrefIdFieldName(String) - Method in class org.molgenis.omx.auth.MolgenisUser
getXrefIdFieldName(String) - Method in class org.molgenis.omx.auth.Person
getXrefIdFieldName(String) - Method in class org.molgenis.omx.auth.PersonRole
GROUP_ - Static variable in class org.molgenis.omx.auth.MolgenisRoleGroupLink
GROUP__NAME - Static variable in class org.molgenis.omx.auth.MolgenisRoleGroupLink

H

handleRequest(MolgenisRequest, MolgenisResponse) - Method in class org.molgenis.omx.auth.service.MolgenisCaptchaService
handleRequest(Database, MolgenisRequest) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementPlugin
handleRequest(Database, MolgenisRequest) - Method in class org.molgenis.omx.auth.service.persontouser.PersonToUser
handleRequest(Database, MolgenisRequest) - Method in class org.molgenis.omx.auth.service.tokenmanager.TokenManager
handleRequest(Database, MolgenisRequest) - Method in class plugin.topmenu.LoginScreen
hashCode() - Method in class org.molgenis.omx.auth.Institute
hashCode() - Method in class org.molgenis.omx.auth.MolgenisGroup
hashCode() - Method in class org.molgenis.omx.auth.MolgenisPermission
hashCode() - Method in class org.molgenis.omx.auth.MolgenisRole
hashCode() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
hashCode() - Method in class org.molgenis.omx.auth.MolgenisUser
hashCode() - Method in class org.molgenis.omx.auth.Person
hashCode() - Method in class org.molgenis.omx.auth.PersonRole
HtmlValueService - Class in org.molgenis.service
HtmlValueService() - Constructor for class org.molgenis.service.HtmlValueService
HyperlinkValueService - Class in org.molgenis.service
HyperlinkValueService() - Constructor for class org.molgenis.service.HyperlinkValueService

I

ID - Static variable in class org.molgenis.omx.auth.Institute
ID - Static variable in class org.molgenis.omx.auth.MolgenisGroup
ID - Static variable in class org.molgenis.omx.auth.MolgenisPermission
ID - Static variable in class org.molgenis.omx.auth.MolgenisRole
ID - Static variable in class org.molgenis.omx.auth.MolgenisRoleGroupLink
ID - Static variable in class org.molgenis.omx.auth.MolgenisUser
ID - Static variable in class org.molgenis.omx.auth.Person
ID - Static variable in class org.molgenis.omx.auth.PersonRole
IDENTIFIER - Static variable in class org.molgenis.omx.auth.MolgenisPermission
IDENTIFIER - Static variable in class org.molgenis.omx.auth.MolgenisRole
IDENTIFIER - Static variable in class org.molgenis.omx.auth.MolgenisRoleGroupLink
importEntity(TupleReader, Database, Database.DatabaseAction) - Method in class org.molgenis.omx.auth.db.InstituteEntityImporter: Imports Institute from tab/comma delimited File
importEntity(TupleReader, Database, Database.DatabaseAction) - Method in class org.molgenis.omx.auth.db.MolgenisGroupEntityImporter: Imports MolgenisGroup from tab/comma delimited File
importEntity(TupleReader, Database, Database.DatabaseAction) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionEntityImporter: Imports MolgenisPermission from tab/comma delimited File
importEntity(TupleReader, Database, Database.DatabaseAction) - Method in class org.molgenis.omx.auth.db.MolgenisRoleEntityImporter: Imports MolgenisRole from tab/comma delimited File
importEntity(TupleReader, Database, Database.DatabaseAction) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkEntityImporter: Imports MolgenisRoleGroupLink from tab/comma delimited File
importEntity(TupleReader, Database, Database.DatabaseAction) - Method in class org.molgenis.omx.auth.db.MolgenisUserEntityImporter: Imports MolgenisUser from tab/comma delimited File
importEntity(TupleReader, Database, Database.DatabaseAction) - Method in class org.molgenis.omx.auth.db.PersonEntityImporter: Imports Person from tab/comma delimited File
importEntity(TupleReader, Database, Database.DatabaseAction) - Method in class org.molgenis.omx.auth.db.PersonRoleEntityImporter: Imports PersonRole from tab/comma delimited File
IndividualService - Class in org.molgenis.service
IndividualService() - Constructor for class org.molgenis.service.IndividualService
insert(MolgenisUser) - Method in class org.molgenis.omx.auth.service.MolgenisUserService
insert(Integer, MolgenisPermission) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Inserts a given MolgenisPermission iff the given user is owner on the entity for whom a permission is being made.
Institute - Class in org.molgenis.omx.auth: Institute: A contact is either a person or an organization.
Institute() - Constructor for class org.molgenis.omx.auth.Institute
Institute(Institute) - Constructor for class org.molgenis.omx.auth.Institute: copy constructor
InstituteEntityImporter - Class in org.molgenis.omx.auth.db: Reads Institute from a delimited (csv) file, resolving xrefs to ids where needed, that is the tricky bit ;-)
InstituteEntityImporter() - Constructor for class org.molgenis.omx.auth.db.InstituteEntityImporter
InstituteForm - Class in org.molgenis.omx.auth.ui: A HtmlForm that is preloaded with all inputs for entity Institute
InstituteForm() - Constructor for class org.molgenis.omx.auth.ui.InstituteForm
InstituteForm(Institute) - Constructor for class org.molgenis.omx.auth.ui.InstituteForm
InstituteJpaMapper - Class in org.molgenis.omx.auth.db
InstituteJpaMapper(Database) - Constructor for class org.molgenis.omx.auth.db.InstituteJpaMapper
InstituteService - Class in org.molgenis.service
InstituteService() - Constructor for class org.molgenis.service.InstituteService
IntValueService - Class in org.molgenis.service
IntValueService() - Constructor for class org.molgenis.service.IntValueService
isAuthenticated() - Method in class org.molgenis.omx.auth.DatabaseLogin: Note: Anonymous is automatically logged in but does not count as being authenticated
isLoginRequired() - Method in class org.molgenis.omx.auth.DatabaseLogin
isVisible() - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementPlugin
isVisible() - Method in class org.molgenis.omx.auth.service.persontouser.PersonToUser
isVisible() - Method in class org.molgenis.omx.auth.service.tokenmanager.TokenManager
isVisible() - Method in class org.molgenis.omx.auth.ui.SimpleUserLoginModel
isVisible() - Method in class plugin.topmenu.LoginScreen

K

KEY_PLUGIN_AUTH_ACTIVATIONMODE - Static variable in class org.molgenis.omx.auth.service.AccountService

L

LASTNAME - Static variable in class org.molgenis.omx.auth.MolgenisUser
LASTNAME - Static variable in class org.molgenis.omx.auth.Person
login(Database, String, String) - Method in class org.molgenis.omx.auth.DatabaseLogin
Login(Database, MolgenisRequest) - Method in class org.molgenis.omx.auth.ui.SimpleUserLogin
LoginScreen - Class in plugin.topmenu
LoginScreen(String, ScreenController<?>) - Constructor for class plugin.topmenu.LoginScreen
LoginScreen.State - Enum in plugin.topmenu
loginUser(String, String) - Method in class org.molgenis.omx.auth.controller.AccountController
logout(Database) - Method in class org.molgenis.omx.auth.DatabaseLogin
Logout(Database, MolgenisRequest) - Method in class org.molgenis.omx.auth.ui.SimpleUserLogin
logoutUser() - Method in class org.molgenis.omx.auth.controller.AccountController
LongValueService - Class in org.molgenis.service
LongValueService() - Constructor for class org.molgenis.service.LongValueService

M

main(String[]) - Static method in class org.molgenis.omx.auth.AuthtestGenerate
MIDINITIALS - Static variable in class org.molgenis.omx.auth.MolgenisUser
MIDINITIALS - Static variable in class org.molgenis.omx.auth.Person
MolgenisCaptchaService - Class in org.molgenis.omx.auth.service
MolgenisCaptchaService(MolgenisContext) - Constructor for class org.molgenis.omx.auth.service.MolgenisCaptchaService
MolgenisFileService - Class in org.molgenis.service
MolgenisFileService() - Constructor for class org.molgenis.service.MolgenisFileService
MolgenisGroup - Class in org.molgenis.omx.auth: MolgenisGroup: .
MolgenisGroup() - Constructor for class org.molgenis.omx.auth.MolgenisGroup
MolgenisGroup(MolgenisGroup) - Constructor for class org.molgenis.omx.auth.MolgenisGroup: copy constructor
MolgenisGroupEntityImporter - Class in org.molgenis.omx.auth.db: Reads MolgenisGroup from a delimited (csv) file, resolving xrefs to ids where needed, that is the tricky bit ;-)
MolgenisGroupEntityImporter() - Constructor for class org.molgenis.omx.auth.db.MolgenisGroupEntityImporter
MolgenisGroupForm - Class in org.molgenis.omx.auth.ui: A HtmlForm that is preloaded with all inputs for entity MolgenisGroup
MolgenisGroupForm() - Constructor for class org.molgenis.omx.auth.ui.MolgenisGroupForm
MolgenisGroupForm(MolgenisGroup) - Constructor for class org.molgenis.omx.auth.ui.MolgenisGroupForm
MolgenisGroupJpaMapper - Class in org.molgenis.omx.auth.db
MolgenisGroupJpaMapper(Database) - Constructor for class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
MolgenisPermission - Class in org.molgenis.omx.auth: MolgenisPermission: .
MolgenisPermission() - Constructor for class org.molgenis.omx.auth.MolgenisPermission
MolgenisPermission(MolgenisPermission) - Constructor for class org.molgenis.omx.auth.MolgenisPermission: copy constructor
MolgenisPermissionEntityImporter - Class in org.molgenis.omx.auth.db: Reads MolgenisPermission from a delimited (csv) file, resolving xrefs to ids where needed, that is the tricky bit ;-)
MolgenisPermissionEntityImporter() - Constructor for class org.molgenis.omx.auth.db.MolgenisPermissionEntityImporter
MolgenisPermissionForm - Class in org.molgenis.omx.auth.ui: A HtmlForm that is preloaded with all inputs for entity MolgenisPermission
MolgenisPermissionForm() - Constructor for class org.molgenis.omx.auth.ui.MolgenisPermissionForm
MolgenisPermissionForm(MolgenisPermission) - Constructor for class org.molgenis.omx.auth.ui.MolgenisPermissionForm
MolgenisPermissionJpaMapper - Class in org.molgenis.omx.auth.db
MolgenisPermissionJpaMapper(Database) - Constructor for class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
MolgenisRole - Class in org.molgenis.omx.auth: MolgenisRole: .
MolgenisRole() - Constructor for class org.molgenis.omx.auth.MolgenisRole
MolgenisRole(MolgenisRole) - Constructor for class org.molgenis.omx.auth.MolgenisRole: copy constructor
MolgenisRoleEntityImporter - Class in org.molgenis.omx.auth.db: Reads MolgenisRole from a delimited (csv) file, resolving xrefs to ids where needed, that is the tricky bit ;-)
MolgenisRoleEntityImporter() - Constructor for class org.molgenis.omx.auth.db.MolgenisRoleEntityImporter
MolgenisRoleForm - Class in org.molgenis.omx.auth.ui: A HtmlForm that is preloaded with all inputs for entity MolgenisRole
MolgenisRoleForm() - Constructor for class org.molgenis.omx.auth.ui.MolgenisRoleForm
MolgenisRoleForm(MolgenisRole) - Constructor for class org.molgenis.omx.auth.ui.MolgenisRoleForm
MolgenisRoleGroupLink - Class in org.molgenis.omx.auth: MolgenisRoleGroupLink: .
MolgenisRoleGroupLink() - Constructor for class org.molgenis.omx.auth.MolgenisRoleGroupLink
MolgenisRoleGroupLink(MolgenisRoleGroupLink) - Constructor for class org.molgenis.omx.auth.MolgenisRoleGroupLink: copy constructor
MolgenisRoleGroupLinkEntityImporter - Class in org.molgenis.omx.auth.db: Reads MolgenisRoleGroupLink from a delimited (csv) file, resolving xrefs to ids where needed, that is the tricky bit ;-)
MolgenisRoleGroupLinkEntityImporter() - Constructor for class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkEntityImporter
MolgenisRoleGroupLinkForm - Class in org.molgenis.omx.auth.ui: A HtmlForm that is preloaded with all inputs for entity MolgenisRoleGroupLink
MolgenisRoleGroupLinkForm() - Constructor for class org.molgenis.omx.auth.ui.MolgenisRoleGroupLinkForm
MolgenisRoleGroupLinkForm(MolgenisRoleGroupLink) - Constructor for class org.molgenis.omx.auth.ui.MolgenisRoleGroupLinkForm
MolgenisRoleGroupLinkJpaMapper - Class in org.molgenis.omx.auth.db
MolgenisRoleGroupLinkJpaMapper(Database) - Constructor for class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
MolgenisRoleJpaMapper - Class in org.molgenis.omx.auth.db
MolgenisRoleJpaMapper(Database) - Constructor for class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
MolgenisUser - Class in org.molgenis.omx.auth: MolgenisUser: Anyone who can login.
MolgenisUser() - Constructor for class org.molgenis.omx.auth.MolgenisUser
MolgenisUser(MolgenisUser) - Constructor for class org.molgenis.omx.auth.MolgenisUser: copy constructor
MolgenisUserDecorator<E extends MolgenisUser> - Class in org.molgenis.omx.auth.decorators
MolgenisUserDecorator(Mapper<E>) - Constructor for class org.molgenis.omx.auth.decorators.MolgenisUserDecorator
MolgenisUserEntityImporter - Class in org.molgenis.omx.auth.db: Reads MolgenisUser from a delimited (csv) file, resolving xrefs to ids where needed, that is the tricky bit ;-)
MolgenisUserEntityImporter() - Constructor for class org.molgenis.omx.auth.db.MolgenisUserEntityImporter
MolgenisUserException - Exception in org.molgenis.omx.auth.service
MolgenisUserException(String) - Constructor for exception org.molgenis.omx.auth.service.MolgenisUserException
MolgenisUserException(Exception) - Constructor for exception org.molgenis.omx.auth.service.MolgenisUserException
MolgenisUserForm - Class in org.molgenis.omx.auth.ui: A HtmlForm that is preloaded with all inputs for entity MolgenisUser
MolgenisUserForm() - Constructor for class org.molgenis.omx.auth.ui.MolgenisUserForm
MolgenisUserForm(MolgenisUser) - Constructor for class org.molgenis.omx.auth.ui.MolgenisUserForm
MolgenisUserJpaMapper - Class in org.molgenis.omx.auth.db
MolgenisUserJpaMapper(Database) - Constructor for class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
MolgenisUserSearchCriteriaVO - Class in org.molgenis.omx.auth.vo
MolgenisUserSearchCriteriaVO() - Constructor for class org.molgenis.omx.auth.vo.MolgenisUserSearchCriteriaVO
MolgenisUserService - Class in org.molgenis.omx.auth.service
MolgenisUserService() - Constructor for class org.molgenis.omx.auth.service.MolgenisUserService
MolgenisUserService(Database) - Constructor for class org.molgenis.omx.auth.service.MolgenisUserService
MrefValueService - Class in org.molgenis.service
MrefValueService() - Constructor for class org.molgenis.service.MrefValueService

N

NAME - Static variable in class org.molgenis.omx.auth.Institute
NAME - Static variable in class org.molgenis.omx.auth.MolgenisPermission
NAME - Static variable in class org.molgenis.omx.auth.MolgenisRole
NAME - Static variable in class org.molgenis.omx.auth.MolgenisRoleGroupLink

O

ObservableFeatureService - Class in org.molgenis.service
ObservableFeatureService() - Constructor for class org.molgenis.service.ObservableFeatureService
ObservationSetService - Class in org.molgenis.service
ObservationSetService() - Constructor for class org.molgenis.service.ObservationSetService
ObservationTargetService - Class in org.molgenis.service
ObservationTargetService() - Constructor for class org.molgenis.service.ObservationTargetService
ObservedValueService - Class in org.molgenis.service
ObservedValueService() - Constructor for class org.molgenis.service.ObservedValueService
OntologyService - Class in org.molgenis.service
OntologyService() - Constructor for class org.molgenis.service.OntologyService
OntologyTermService - Class in org.molgenis.service
OntologyTermService() - Constructor for class org.molgenis.service.OntologyTermService
OpenIdAuthenticationForm - Class in org.molgenis.omx.auth.ui.form
OpenIdAuthenticationForm() - Constructor for class org.molgenis.omx.auth.ui.form.OpenIdAuthenticationForm
org.molgenis.omx.auth - package org.molgenis.omx.auth
org.molgenis.omx.auth.controller - package org.molgenis.omx.auth.controller
org.molgenis.omx.auth.db - package org.molgenis.omx.auth.db
org.molgenis.omx.auth.decorators - package org.molgenis.omx.auth.decorators
org.molgenis.omx.auth.service - package org.molgenis.omx.auth.service
org.molgenis.omx.auth.service.permissionmanagement - package org.molgenis.omx.auth.service.permissionmanagement
org.molgenis.omx.auth.service.persontouser - package org.molgenis.omx.auth.service.persontouser
org.molgenis.omx.auth.service.tokenmanager - package org.molgenis.omx.auth.service.tokenmanager
org.molgenis.omx.auth.ui - package org.molgenis.omx.auth.ui
org.molgenis.omx.auth.ui.form - package org.molgenis.omx.auth.ui.form
org.molgenis.omx.auth.util - package org.molgenis.omx.auth.util
org.molgenis.omx.auth.vo - package org.molgenis.omx.auth.vo
org.molgenis.service - package org.molgenis.service
owns(Class<? extends Entity>) - Method in class org.molgenis.omx.auth.DatabaseLogin
owns(Entity) - Method in class org.molgenis.omx.auth.DatabaseLogin

P

PanelService - Class in org.molgenis.service
PanelService() - Constructor for class org.molgenis.service.PanelService
PanelSourceService - Class in org.molgenis.service
PanelSourceService() - Constructor for class org.molgenis.service.PanelSourceService
PASSWORD_ - Static variable in class org.molgenis.omx.auth.MolgenisUser
PasswordHasher - Class in org.molgenis.omx.auth.util
PasswordHasher() - Constructor for class org.molgenis.omx.auth.util.PasswordHasher
PasswordResetRequest - Class in org.molgenis.omx.auth.vo
PasswordResetRequest() - Constructor for class org.molgenis.omx.auth.vo.PasswordResetRequest
PERMISSION - Static variable in class org.molgenis.omx.auth.MolgenisPermission
PermissionManagementModel - Class in org.molgenis.omx.auth.service.permissionmanagement: This is a class that Jessica introduced to keep permission management variables in.
PermissionManagementModel() - Constructor for class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementModel
PermissionManagementPlugin - Class in org.molgenis.omx.auth.service.permissionmanagement
PermissionManagementPlugin(String, ScreenController<?>) - Constructor for class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementPlugin
PermissionManagementService - Class in org.molgenis.omx.auth.service.permissionmanagement
Person - Class in org.molgenis.omx.auth: Person: Person represents one or more people involved with an Investigation.
Person() - Constructor for class org.molgenis.omx.auth.Person
Person(Person) - Constructor for class org.molgenis.omx.auth.Person: copy constructor
PersonContact - Interface in org.molgenis.omx.auth: PersonContact: .
PersonEntityImporter - Class in org.molgenis.omx.auth.db: Reads Person from a delimited (csv) file, resolving xrefs to ids where needed, that is the tricky bit ;-)
PersonEntityImporter() - Constructor for class org.molgenis.omx.auth.db.PersonEntityImporter
PersonForm - Class in org.molgenis.omx.auth.ui: A HtmlForm that is preloaded with all inputs for entity Person
PersonForm() - Constructor for class org.molgenis.omx.auth.ui.PersonForm
PersonForm(Person) - Constructor for class org.molgenis.omx.auth.ui.PersonForm
PersonJpaMapper - Class in org.molgenis.omx.auth.db
PersonJpaMapper(Database) - Constructor for class org.molgenis.omx.auth.db.PersonJpaMapper
PersonRole - Class in org.molgenis.omx.auth: PersonRole: Seperate type of ontologyTerm to administrate roles..
PersonRole() - Constructor for class org.molgenis.omx.auth.PersonRole
PersonRole(PersonRole) - Constructor for class org.molgenis.omx.auth.PersonRole: copy constructor
PersonRoleEntityImporter - Class in org.molgenis.omx.auth.db: Reads PersonRole from a delimited (csv) file, resolving xrefs to ids where needed, that is the tricky bit ;-)
PersonRoleEntityImporter() - Constructor for class org.molgenis.omx.auth.db.PersonRoleEntityImporter
PersonRoleForm - Class in org.molgenis.omx.auth.ui: A HtmlForm that is preloaded with all inputs for entity PersonRole
PersonRoleForm() - Constructor for class org.molgenis.omx.auth.ui.PersonRoleForm
PersonRoleForm(PersonRole) - Constructor for class org.molgenis.omx.auth.ui.PersonRoleForm
PersonRoleJpaMapper - Class in org.molgenis.omx.auth.db
PersonRoleJpaMapper(Database) - Constructor for class org.molgenis.omx.auth.db.PersonRoleJpaMapper
PersonRoleService - Class in org.molgenis.service
PersonRoleService() - Constructor for class org.molgenis.service.PersonRoleService
PersonService - Class in org.molgenis.service
PersonService() - Constructor for class org.molgenis.service.PersonService
PersonToUser - Class in org.molgenis.omx.auth.service.persontouser
PersonToUser(String, ScreenController<?>) - Constructor for class org.molgenis.omx.auth.service.persontouser.PersonToUser
PersonToUserModel - Class in org.molgenis.omx.auth.service.persontouser
PersonToUserModel() - Constructor for class org.molgenis.omx.auth.service.persontouser.PersonToUserModel
PHONE - Static variable in class org.molgenis.omx.auth.Institute
PHONE - Static variable in class org.molgenis.omx.auth.MolgenisUser
PHONE - Static variable in class org.molgenis.omx.auth.Person
plugin.topmenu - package plugin.topmenu
prepareFileAttachements(List<Institute>, File) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper
prepareFileAttachements(List<MolgenisGroup>, File) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
prepareFileAttachements(List<MolgenisPermission>, File) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
prepareFileAttachements(List<MolgenisRoleGroupLink>, File) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
prepareFileAttachements(List<MolgenisRole>, File) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
prepareFileAttachements(List<MolgenisUser>, File) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
prepareFileAttachements(List<Person>, File) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper
prepareFileAttachements(List<PersonRole>, File) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper
ProtocolService - Class in org.molgenis.service
ProtocolService() - Constructor for class org.molgenis.service.ProtocolService

Q

query(Database) - Static method in class org.molgenis.omx.auth.Institute: Shorthand for db.query(Institute.class).
query(Database) - Static method in class org.molgenis.omx.auth.MolgenisGroup: Shorthand for db.query(MolgenisGroup.class).
query(Database) - Static method in class org.molgenis.omx.auth.MolgenisPermission: Shorthand for db.query(MolgenisPermission.class).
query(Database) - Static method in class org.molgenis.omx.auth.MolgenisRole: Shorthand for db.query(MolgenisRole.class).
query(Database) - Static method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Shorthand for db.query(MolgenisRoleGroupLink.class).
query(Database) - Static method in class org.molgenis.omx.auth.MolgenisUser: Shorthand for db.query(MolgenisUser.class).
query(Database) - Static method in class org.molgenis.omx.auth.Person: Shorthand for db.query(Person.class).
query(Database) - Static method in class org.molgenis.omx.auth.PersonRole: Shorthand for db.query(PersonRole.class).

R

read(Integer) - Method in class org.molgenis.service.AccessionService
read(Integer) - Method in class org.molgenis.service.BoolValueService
read(Integer) - Method in class org.molgenis.service.CategoricalValueService
read(Integer) - Method in class org.molgenis.service.CategoryService
read(Integer) - Method in class org.molgenis.service.CharacteristicService
read(Integer) - Method in class org.molgenis.service.DataSetService
read(Integer) - Method in class org.molgenis.service.DateTimeValueService
read(Integer) - Method in class org.molgenis.service.DateValueService
read(Integer) - Method in class org.molgenis.service.DecimalValueService
read(Integer) - Method in class org.molgenis.service.EmailValueService
read(Integer) - Method in class org.molgenis.service.HtmlValueService
read(Integer) - Method in class org.molgenis.service.HyperlinkValueService
read(Integer) - Method in class org.molgenis.service.IndividualService
read(Integer) - Method in class org.molgenis.service.InstituteService
read(Integer) - Method in class org.molgenis.service.IntValueService
read(Integer) - Method in class org.molgenis.service.LongValueService
read(Integer) - Method in class org.molgenis.service.MolgenisFileService
read(Integer) - Method in class org.molgenis.service.MrefValueService
read(Integer) - Method in class org.molgenis.service.ObservableFeatureService
read(Integer) - Method in class org.molgenis.service.ObservationSetService
read(Integer) - Method in class org.molgenis.service.ObservationTargetService
read(Integer) - Method in class org.molgenis.service.ObservedValueService
read(Integer) - Method in class org.molgenis.service.OntologyService
read(Integer) - Method in class org.molgenis.service.OntologyTermService
read(Integer) - Method in class org.molgenis.service.PanelService
read(Integer) - Method in class org.molgenis.service.PanelSourceService
read(Integer) - Method in class org.molgenis.service.PersonRoleService
read(Integer) - Method in class org.molgenis.service.PersonService
read(Integer) - Method in class org.molgenis.service.ProtocolService
read(Integer) - Method in class org.molgenis.service.RuntimePropertyService
read(Integer) - Method in class org.molgenis.service.SpeciesService
read(Integer) - Method in class org.molgenis.service.StringValueService
read(Integer) - Method in class org.molgenis.service.TextValueService
read(Integer) - Method in class org.molgenis.service.ValueService
read(Integer) - Method in class org.molgenis.service.XrefValueService
readAll() - Method in class org.molgenis.service.AccessionService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.AccessionService
readAll() - Method in class org.molgenis.service.BoolValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.BoolValueService
readAll() - Method in class org.molgenis.service.CategoricalValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.CategoricalValueService
readAll() - Method in class org.molgenis.service.CategoryService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.CategoryService
readAll() - Method in class org.molgenis.service.CharacteristicService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.CharacteristicService
readAll() - Method in class org.molgenis.service.DataSetService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.DataSetService
readAll() - Method in class org.molgenis.service.DateTimeValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.DateTimeValueService
readAll() - Method in class org.molgenis.service.DateValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.DateValueService
readAll() - Method in class org.molgenis.service.DecimalValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.DecimalValueService
readAll() - Method in class org.molgenis.service.EmailValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.EmailValueService
readAll() - Method in class org.molgenis.service.HtmlValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.HtmlValueService
readAll() - Method in class org.molgenis.service.HyperlinkValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.HyperlinkValueService
readAll() - Method in class org.molgenis.service.IndividualService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.IndividualService
readAll() - Method in class org.molgenis.service.InstituteService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.InstituteService
readAll() - Method in class org.molgenis.service.IntValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.IntValueService
readAll() - Method in class org.molgenis.service.LongValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.LongValueService
readAll() - Method in class org.molgenis.service.MolgenisFileService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.MolgenisFileService
readAll() - Method in class org.molgenis.service.MrefValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.MrefValueService
readAll() - Method in class org.molgenis.service.ObservableFeatureService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.ObservableFeatureService
readAll() - Method in class org.molgenis.service.ObservationSetService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.ObservationSetService
readAll() - Method in class org.molgenis.service.ObservationTargetService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.ObservationTargetService
readAll() - Method in class org.molgenis.service.ObservedValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.ObservedValueService
readAll() - Method in class org.molgenis.service.OntologyService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.OntologyService
readAll() - Method in class org.molgenis.service.OntologyTermService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.OntologyTermService
readAll() - Method in class org.molgenis.service.PanelService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.PanelService
readAll() - Method in class org.molgenis.service.PanelSourceService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.PanelSourceService
readAll() - Method in class org.molgenis.service.PersonRoleService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.PersonRoleService
readAll() - Method in class org.molgenis.service.PersonService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.PersonService
readAll() - Method in class org.molgenis.service.ProtocolService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.ProtocolService
readAll() - Method in class org.molgenis.service.RuntimePropertyService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.RuntimePropertyService
readAll() - Method in class org.molgenis.service.SpeciesService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.SpeciesService
readAll() - Method in class org.molgenis.service.StringValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.StringValueService
readAll() - Method in class org.molgenis.service.TextValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.TextValueService
readAll() - Method in class org.molgenis.service.ValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.ValueService
readAll() - Method in class org.molgenis.service.XrefValueService
readAll(int, int, List<QueryRule>) - Method in class org.molgenis.service.XrefValueService
redirect - Variable in class org.molgenis.omx.auth.DatabaseLogin
Register(Database, MolgenisRequest) - Method in class org.molgenis.omx.auth.ui.UserLogin
RegisterRequest - Class in org.molgenis.omx.auth.vo
RegisterRequest() - Constructor for class org.molgenis.omx.auth.vo.RegisterRequest
registerUser(RegisterRequest, CaptchaRequest) - Method in class org.molgenis.omx.auth.controller.AccountController
RegistrationForm - Class in org.molgenis.omx.auth.ui.form
RegistrationForm() - Constructor for class org.molgenis.omx.auth.ui.form.RegistrationForm
reload(Database) - Method in class org.molgenis.omx.auth.DatabaseLogin: Reloads all permission settings for this user from database.
reload(Database) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementPlugin
reload(Database) - Method in class org.molgenis.omx.auth.service.persontouser.PersonToUser
reload(Database) - Method in class org.molgenis.omx.auth.service.tokenmanager.TokenManager
reload(Database) - Method in class org.molgenis.omx.auth.ui.SimpleUserLogin
reload(Database) - Method in class org.molgenis.omx.auth.ui.UserLogin
reload(Database) - Method in class plugin.topmenu.LoginScreen
remove(List<E>) - Method in class org.molgenis.omx.auth.decorators.MolgenisUserDecorator
remove(int, int) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Remove a permission based on permission id.
resetPassword(PasswordResetRequest) - Method in class org.molgenis.omx.auth.controller.AccountController
resetPassword(MolgenisUser) - Method in class org.molgenis.omx.auth.service.AccountService
resolveForeignKeys(List<Institute>) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper
resolveForeignKeys(List<MolgenisGroup>) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
resolveForeignKeys(List<MolgenisPermission>) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
resolveForeignKeys(List<MolgenisRoleGroupLink>) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
resolveForeignKeys(List<MolgenisRole>) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
resolveForeignKeys(List<MolgenisUser>) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
resolveForeignKeys(List<Person>) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper
resolveForeignKeys(List<PersonRole>) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper
ROLE_ - Static variable in class org.molgenis.omx.auth.MolgenisPermission
ROLE_ - Static variable in class org.molgenis.omx.auth.MolgenisRoleGroupLink
ROLE__NAME - Static variable in class org.molgenis.omx.auth.MolgenisPermission
ROLE__NAME - Static variable in class org.molgenis.omx.auth.MolgenisRoleGroupLink
ROLES - Static variable in class org.molgenis.omx.auth.MolgenisUser
ROLES - Static variable in class org.molgenis.omx.auth.Person
ROLES_IDENTIFIER - Static variable in class org.molgenis.omx.auth.MolgenisUser
ROLES_IDENTIFIER - Static variable in class org.molgenis.omx.auth.Person
RuntimePropertyService - Class in org.molgenis.service
RuntimePropertyService() - Constructor for class org.molgenis.service.RuntimePropertyService

S

saveFileAttachements(List<Institute>, File) - Method in class org.molgenis.omx.auth.db.InstituteJpaMapper
saveFileAttachements(List<MolgenisGroup>, File) - Method in class org.molgenis.omx.auth.db.MolgenisGroupJpaMapper
saveFileAttachements(List<MolgenisPermission>, File) - Method in class org.molgenis.omx.auth.db.MolgenisPermissionJpaMapper
saveFileAttachements(List<MolgenisRoleGroupLink>, File) - Method in class org.molgenis.omx.auth.db.MolgenisRoleGroupLinkJpaMapper
saveFileAttachements(List<MolgenisRole>, File) - Method in class org.molgenis.omx.auth.db.MolgenisRoleJpaMapper
saveFileAttachements(List<MolgenisUser>, File) - Method in class org.molgenis.omx.auth.db.MolgenisUserJpaMapper
saveFileAttachements(List<Person>, File) - Method in class org.molgenis.omx.auth.db.PersonJpaMapper
saveFileAttachements(List<PersonRole>, File) - Method in class org.molgenis.omx.auth.db.PersonRoleJpaMapper
sendPassword(Database, MolgenisRequest) - Method in class org.molgenis.omx.auth.ui.SimpleUserLogin
set(Tuple, boolean) - Method in class org.molgenis.omx.auth.Institute
set(Tuple, boolean) - Method in class org.molgenis.omx.auth.MolgenisGroup
set(Tuple, boolean) - Method in class org.molgenis.omx.auth.MolgenisPermission
set(Tuple, boolean) - Method in class org.molgenis.omx.auth.MolgenisRole
set(Tuple, boolean) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
set(Tuple, boolean) - Method in class org.molgenis.omx.auth.MolgenisUser
set(Tuple, boolean) - Method in class org.molgenis.omx.auth.Person
set(Tuple, boolean) - Method in class org.molgenis.omx.auth.PersonRole
set__Type(String) - Method in class org.molgenis.omx.auth.MolgenisRole: Set the Subtypes have to be set to allow searching.
setAction(String) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementModel
setAction(String) - Method in class org.molgenis.omx.auth.ui.SimpleUserLoginModel
setActivationCode(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the Used as alternative authentication mechanism to verify user email and/or if user has lost password..
setActivationCode(String) - Method in class org.molgenis.omx.auth.vo.MolgenisUserSearchCriteriaVO
setActive(Boolean) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the Boolean to indicate if this account can be used to login.
setAddress(String) - Method in interface org.molgenis.omx.auth.Contact
setAddress(String) - Method in class org.molgenis.omx.auth.Institute: Set the The address of the Contact..
setAddress(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the The address of the Contact..
setAddress(String) - Method in class org.molgenis.omx.auth.Person: Set the The address of the Contact..
setAddress(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setAdmin(List<? extends Entity>, Database) - Method in class org.molgenis.omx.auth.DatabaseLogin
setAffiliation(Institute) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the Affiliation.
setAffiliation(Integer) - Method in class org.molgenis.omx.auth.MolgenisUser
setAffiliation(Institute) - Method in class org.molgenis.omx.auth.Person: Set the Affiliation.
setAffiliation(Integer) - Method in class org.molgenis.omx.auth.Person
setAffiliation(Institute) - Method in interface org.molgenis.omx.auth.PersonContact
setAffiliation_Id(Integer) - Method in class org.molgenis.omx.auth.MolgenisUser: Set foreign key for field affiliation.
setAffiliation_Id(Integer) - Method in class org.molgenis.omx.auth.Person: Set foreign key for field affiliation.
setAffiliation_Id(Integer) - Method in interface org.molgenis.omx.auth.PersonContact
setAffiliation_Name(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set a pretty label for cross reference Affiliation to Institute.Id.
setAffiliation_Name(String) - Method in class org.molgenis.omx.auth.Person: Set a pretty label for cross reference Affiliation to Institute.Id.
setAffiliation_Name(String) - Method in interface org.molgenis.omx.auth.PersonContact
setAuthenticationForm(Container) - Method in class org.molgenis.omx.auth.ui.SimpleUserLoginModel
setCanRead(MolgenisRole) - Method in interface org.molgenis.omx.auth.Authorizable
setCanRead_Id(Integer) - Method in interface org.molgenis.omx.auth.Authorizable
setCanRead_Name(String) - Method in interface org.molgenis.omx.auth.Authorizable
setCanWrite(MolgenisRole) - Method in interface org.molgenis.omx.auth.Authorizable
setCanWrite_Id(Integer) - Method in interface org.molgenis.omx.auth.Authorizable
setCanWrite_Name(String) - Method in interface org.molgenis.omx.auth.Authorizable
setCaptcha(String) - Method in class org.molgenis.omx.auth.vo.CaptchaRequest
setCity(String) - Method in interface org.molgenis.omx.auth.Contact
setCity(String) - Method in class org.molgenis.omx.auth.Institute: Set the Added from the old definition of MolgenisUser.
setCity(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the Added from the old definition of MolgenisUser.
setCity(String) - Method in class org.molgenis.omx.auth.Person: Set the Added from the old definition of MolgenisUser.
setCity(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setConfirmPassword(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setCountry(String) - Method in interface org.molgenis.omx.auth.Contact
setCountry(String) - Method in class org.molgenis.omx.auth.Institute: Set the Added from the old definition of MolgenisUser.
setCountry(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the Added from the old definition of MolgenisUser.
setCountry(String) - Method in class org.molgenis.omx.auth.Person: Set the Added from the old definition of MolgenisUser.
setCountry(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setDatabase(Database) - Method in class org.molgenis.omx.auth.service.MolgenisUserService
setDb(Database) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService
setDepartment(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the Added from the old definition of MolgenisUser.
setDepartment(String) - Method in class org.molgenis.omx.auth.Person: Set the Added from the old definition of MolgenisUser.
setDepartment(String) - Method in interface org.molgenis.omx.auth.PersonContact
setDepartment(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setEmail(String) - Method in interface org.molgenis.omx.auth.Contact
setEmail(String) - Method in class org.molgenis.omx.auth.Institute: Set the The email address of the Contact..
setEmail(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the The email address of the Contact..
setEmail(String) - Method in class org.molgenis.omx.auth.Person: Set the The email address of the Contact..
setEmail(String) - Method in class org.molgenis.omx.auth.vo.PasswordResetRequest
setEmail(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setEntity(MolgenisEntity) - Method in class org.molgenis.omx.auth.MolgenisPermission: Set the entity.
setEntity(Integer) - Method in class org.molgenis.omx.auth.MolgenisPermission
setEntity_ClassName(String) - Method in class org.molgenis.omx.auth.MolgenisPermission: Set a pretty label for cross reference Entity to MolgenisEntity.Id.
setEntity_Id(Integer) - Method in class org.molgenis.omx.auth.MolgenisPermission: Set foreign key for field entity.
setFax(String) - Method in interface org.molgenis.omx.auth.Contact
setFax(String) - Method in class org.molgenis.omx.auth.Institute: Set the The fax number of the Contact..
setFax(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the The fax number of the Contact..
setFax(String) - Method in class org.molgenis.omx.auth.Person: Set the The fax number of the Contact..
setFax(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setFirstName(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the First Name.
setFirstName(String) - Method in class org.molgenis.omx.auth.Person: Set the First Name.
setFirstName(String) - Method in interface org.molgenis.omx.auth.PersonContact
setFirstname(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setForgotForm(Container) - Method in class org.molgenis.omx.auth.ui.SimpleUserLoginModel
setGroup(MolgenisGroup) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Set the group_.
setGroup(Integer) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
setGroup_Id(Integer) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Set foreign key for field group_.
setGroup_Name(String) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Set a pretty label for cross reference Group to MolgenisGroup.Id.
setGroupList(List<MolgenisGroup>) - Method in class org.molgenis.omx.auth.service.persontouser.PersonToUserModel
setId(Integer) - Method in class org.molgenis.omx.auth.MolgenisPermission: Set the automatically generated internal id, only for internal use..
setId(Integer) - Method in class org.molgenis.omx.auth.MolgenisRole: Set the automatically generated internal id, only for internal use..
setId(Integer) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Set the automatically generated internal id, only for internal use..
setIdentifier(String) - Method in class org.molgenis.omx.auth.MolgenisPermission: Set the user supplied or automatically assigned (using a decorator) unique and short identifier, e.g.
setIdentifier(String) - Method in class org.molgenis.omx.auth.MolgenisRole: Set the user supplied or automatically assigned (using a decorator) unique and short identifier, e.g.
setIdentifier(String) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Set the user supplied or automatically assigned (using a decorator) unique and short identifier, e.g.
setInstitute(Integer) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setLastName(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the Last Name.
setLastName(String) - Method in class org.molgenis.omx.auth.Person: Set the Last Name.
setLastName(String) - Method in interface org.molgenis.omx.auth.PersonContact
setLastname(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setMailCurator(String) - Method in class org.molgenis.omx.auth.ui.SimpleUserLoginModel
setMidInitials(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the Mid Initials.
setMidInitials(String) - Method in class org.molgenis.omx.auth.Person: Set the Mid Initials.
setMidInitials(String) - Method in interface org.molgenis.omx.auth.PersonContact
setName(String) - Method in class org.molgenis.omx.auth.Institute: Set the Name.
setName(String) - Method in class org.molgenis.omx.auth.MolgenisPermission: Set the human readible name, not necessary unique..
setName(String) - Method in class org.molgenis.omx.auth.MolgenisRole: Set the Name.
setName(String) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Set the human readible name, not necessary unique..
setName(String) - Method in class org.molgenis.omx.auth.vo.MolgenisUserSearchCriteriaVO
setOwns(MolgenisRole) - Method in interface org.molgenis.omx.auth.Authorizable
setOwns_Id(Integer) - Method in interface org.molgenis.omx.auth.Authorizable
setOwns_Name(String) - Method in interface org.molgenis.omx.auth.Authorizable
setPassword(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the big fixme: password type.
setPassword(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setPermId(int) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementModel
setPermission(String) - Method in class org.molgenis.omx.auth.MolgenisPermission: Set the permission.
setPersonList(List<Person>) - Method in class org.molgenis.omx.auth.service.persontouser.PersonToUserModel
setPhone(String) - Method in interface org.molgenis.omx.auth.Contact
setPhone(String) - Method in class org.molgenis.omx.auth.Institute: Set the The telephone number of the Contact including the suitable area codes..
setPhone(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the The telephone number of the Contact including the suitable area codes..
setPhone(String) - Method in class org.molgenis.omx.auth.Person: Set the The telephone number of the Contact including the suitable area codes..
setPhone(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setPosition(Integer) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setRedirect(String) - Method in class org.molgenis.omx.auth.DatabaseLogin
setRegistrationForm(Container) - Method in class org.molgenis.omx.auth.ui.UserLoginModel
setRole(MolgenisRole) - Method in class org.molgenis.omx.auth.MolgenisPermission: Set the role_.
setRole(Integer) - Method in class org.molgenis.omx.auth.MolgenisPermission
setRole(MolgenisRole) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Set the role_.
setRole(Integer) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
setRole(MolgenisRole) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementModel
setRole_Id(Integer) - Method in class org.molgenis.omx.auth.MolgenisPermission: Set foreign key for field role_.
setRole_Id(Integer) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Set foreign key for field role_.
setRole_Name(String) - Method in class org.molgenis.omx.auth.MolgenisPermission: Set a pretty label for cross reference Role to MolgenisRole.Id.
setRole_Name(String) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink: Set a pretty label for cross reference Role to MolgenisRole.Id.
setRoles(PersonRole) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the Indicate role of the contact, e.g.
setRoles(Integer) - Method in class org.molgenis.omx.auth.MolgenisUser
setRoles(PersonRole) - Method in class org.molgenis.omx.auth.Person: Set the Indicate role of the contact, e.g.
setRoles(Integer) - Method in class org.molgenis.omx.auth.Person
setRoles(PersonRole) - Method in interface org.molgenis.omx.auth.PersonContact
setRoles_Id(Integer) - Method in class org.molgenis.omx.auth.MolgenisUser: Set foreign key for field roles.
setRoles_Id(Integer) - Method in class org.molgenis.omx.auth.Person: Set foreign key for field roles.
setRoles_Id(Integer) - Method in interface org.molgenis.omx.auth.PersonContact
setRoles_Identifier(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set a pretty label for cross reference Roles to PersonRole.Id.
setRoles_Identifier(String) - Method in class org.molgenis.omx.auth.Person: Set a pretty label for cross reference Roles to PersonRole.Id.
setRoles_Identifier(String) - Method in interface org.molgenis.omx.auth.PersonContact
setService(PermissionManagementService) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementPlugin
setSuperuser(Boolean) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the superuser.
setTitle(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the An academic title, e.g.
setTitle(String) - Method in class org.molgenis.omx.auth.Person: Set the An academic title, e.g.
setTitle(String) - Method in interface org.molgenis.omx.auth.PersonContact
setTitle(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setTokens(Map<String, Token>) - Method in class org.molgenis.omx.auth.service.tokenmanager.TokenManagerModel
setTollFreePhone(String) - Method in interface org.molgenis.omx.auth.Contact
setTollFreePhone(String) - Method in class org.molgenis.omx.auth.Institute: Set the A toll free phone number for the Contact, including suitable area codes..
setTollFreePhone(String) - Method in class org.molgenis.omx.auth.MolgenisUser: Set the A toll free phone number for the Contact, including suitable area codes..
setTollFreePhone(String) - Method in class org.molgenis.omx.auth.Person: Set the A toll free phone number for the Contact, including suitable area codes..
setTollFreePhone(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
setUserAreaForm(Container) - Method in class org.molgenis.omx.auth.ui.SimpleUserLoginModel
setUsername(String) - Method in class org.molgenis.omx.auth.vo.RegisterRequest
SimpleUserLogin - Class in org.molgenis.omx.auth.ui: Login box
SimpleUserLogin(String, ScreenController<?>) - Constructor for class org.molgenis.omx.auth.ui.SimpleUserLogin
SimpleUserLoginModel - Class in org.molgenis.omx.auth.ui
SimpleUserLoginModel(SimpleUserLogin) - Constructor for class org.molgenis.omx.auth.ui.SimpleUserLoginModel
SpeciesService - Class in org.molgenis.service
SpeciesService() - Constructor for class org.molgenis.service.SpeciesService
StringValueService - Class in org.molgenis.service
StringValueService() - Constructor for class org.molgenis.service.StringValueService
SUPERUSER - Static variable in class org.molgenis.omx.auth.MolgenisUser

T

TextValueService - Class in org.molgenis.service
TextValueService() - Constructor for class org.molgenis.service.TextValueService
TITLE - Static variable in class org.molgenis.omx.auth.MolgenisUser
TITLE - Static variable in class org.molgenis.omx.auth.Person
TokenManager - Class in org.molgenis.omx.auth.service.tokenmanager
TokenManager(String, ScreenController<?>) - Constructor for class org.molgenis.omx.auth.service.tokenmanager.TokenManager
TokenManagerModel - Class in org.molgenis.omx.auth.service.tokenmanager
TokenManagerModel() - Constructor for class org.molgenis.omx.auth.service.tokenmanager.TokenManagerModel
TOLLFREEPHONE - Static variable in class org.molgenis.omx.auth.Institute
TOLLFREEPHONE - Static variable in class org.molgenis.omx.auth.MolgenisUser
TOLLFREEPHONE - Static variable in class org.molgenis.omx.auth.Person
toMD5(String) - Method in class org.molgenis.omx.auth.util.PasswordHasher
toString() - Method in class org.molgenis.omx.auth.DatabaseLogin
toString() - Method in class org.molgenis.omx.auth.Institute
toString(boolean) - Method in class org.molgenis.omx.auth.Institute
toString() - Method in class org.molgenis.omx.auth.MolgenisGroup
toString(boolean) - Method in class org.molgenis.omx.auth.MolgenisGroup
toString() - Method in class org.molgenis.omx.auth.MolgenisPermission
toString(boolean) - Method in class org.molgenis.omx.auth.MolgenisPermission
toString() - Method in class org.molgenis.omx.auth.MolgenisRole
toString(boolean) - Method in class org.molgenis.omx.auth.MolgenisRole
toString() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
toString(boolean) - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
toString() - Method in class org.molgenis.omx.auth.MolgenisUser
toString(boolean) - Method in class org.molgenis.omx.auth.MolgenisUser
toString() - Method in class org.molgenis.omx.auth.Person
toString(boolean) - Method in class org.molgenis.omx.auth.Person
toString() - Method in class org.molgenis.omx.auth.PersonRole
toString(boolean) - Method in class org.molgenis.omx.auth.PersonRole

U

update(List<E>) - Method in class org.molgenis.omx.auth.decorators.MolgenisUserDecorator
update(MolgenisUser) - Method in class org.molgenis.omx.auth.service.MolgenisUserService
update(Integer, MolgenisPermission) - Method in class org.molgenis.omx.auth.service.permissionmanagement.PermissionManagementService: Updates a given MolgenisPermission iff the given user is owner on that entity
update(Accession) - Method in class org.molgenis.service.AccessionService
update(BoolValue) - Method in class org.molgenis.service.BoolValueService
update(CategoricalValue) - Method in class org.molgenis.service.CategoricalValueService
update(Category) - Method in class org.molgenis.service.CategoryService
update(Characteristic) - Method in class org.molgenis.service.CharacteristicService
update(DataSet) - Method in class org.molgenis.service.DataSetService
update(DateTimeValue) - Method in class org.molgenis.service.DateTimeValueService
update(DateValue) - Method in class org.molgenis.service.DateValueService
update(DecimalValue) - Method in class org.molgenis.service.DecimalValueService
update(EmailValue) - Method in class org.molgenis.service.EmailValueService
update(HtmlValue) - Method in class org.molgenis.service.HtmlValueService
update(HyperlinkValue) - Method in class org.molgenis.service.HyperlinkValueService
update(Individual) - Method in class org.molgenis.service.IndividualService
update(Institute) - Method in class org.molgenis.service.InstituteService
update(IntValue) - Method in class org.molgenis.service.IntValueService
update(LongValue) - Method in class org.molgenis.service.LongValueService
update(MolgenisFile) - Method in class org.molgenis.service.MolgenisFileService
update(MrefValue) - Method in class org.molgenis.service.MrefValueService
update(ObservableFeature) - Method in class org.molgenis.service.ObservableFeatureService
update(ObservationSet) - Method in class org.molgenis.service.ObservationSetService
update(ObservationTarget) - Method in class org.molgenis.service.ObservationTargetService
update(ObservedValue) - Method in class org.molgenis.service.ObservedValueService
update(Ontology) - Method in class org.molgenis.service.OntologyService
update(OntologyTerm) - Method in class org.molgenis.service.OntologyTermService
update(Panel) - Method in class org.molgenis.service.PanelService
update(PanelSource) - Method in class org.molgenis.service.PanelSourceService
update(PersonRole) - Method in class org.molgenis.service.PersonRoleService
update(Person) - Method in class org.molgenis.service.PersonService
update(Protocol) - Method in class org.molgenis.service.ProtocolService
update(RuntimeProperty) - Method in class org.molgenis.service.RuntimePropertyService
update(Species) - Method in class org.molgenis.service.SpeciesService
update(StringValue) - Method in class org.molgenis.service.StringValueService
update(TextValue) - Method in class org.molgenis.service.TextValueService
update(Value) - Method in class org.molgenis.service.ValueService
update(XrefValue) - Method in class org.molgenis.service.XrefValueService
UserAreaForm - Class in org.molgenis.omx.auth.ui.form
UserAreaForm() - Constructor for class org.molgenis.omx.auth.ui.form.UserAreaForm
UserLogin - Class in org.molgenis.omx.auth.ui: This screen shows a login box, or if someone is already logged in, the user information and a logout button.
UserLogin(String, ScreenController<?>) - Constructor for class org.molgenis.omx.auth.ui.UserLogin
UserLoginModel - Class in org.molgenis.omx.auth.ui
UserLoginModel(UserLogin) - Constructor for class org.molgenis.omx.auth.ui.UserLoginModel

V

validate() - Method in class org.molgenis.omx.auth.Institute
validate() - Method in class org.molgenis.omx.auth.MolgenisGroup
validate() - Method in class org.molgenis.omx.auth.MolgenisPermission
validate() - Method in class org.molgenis.omx.auth.MolgenisRole
validate() - Method in class org.molgenis.omx.auth.MolgenisRoleGroupLink
validate() - Method in class org.molgenis.omx.auth.MolgenisUser
validate() - Method in class org.molgenis.omx.auth.Person
validate() - Method in class org.molgenis.omx.auth.PersonRole
validateCaptcha(CaptchaRequest) - Method in class org.molgenis.omx.auth.controller.CaptchaController
validateCaptcha(String) - Method in class org.molgenis.omx.auth.service.CaptchaService
validateCaptchaFromForm(CaptchaRequest) - Method in class org.molgenis.omx.auth.controller.CaptchaController
valueOf(String) - Static method in enum plugin.topmenu.LoginScreen.State: Returns the enum constant of this type with the specified name.
values() - Static method in enum plugin.topmenu.LoginScreen.State: Returns an array containing the constants of this enum type, in the order they are declared.
ValueService - Class in org.molgenis.service
ValueService() - Constructor for class org.molgenis.service.ValueService

X

XrefValueService - Class in org.molgenis.service
XrefValueService() - Constructor for class org.molgenis.service.XrefValueService

_

__TYPE - Static variable in class org.molgenis.omx.auth.MolgenisRole

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