org.molgenis.omx.biobankconnect.utils

Class OntologyLoader

java.lang.Object

org.molgenis.omx.biobankconnect.utils.OntologyLoader

public class OntologyLoader
extends Object

Constructor Summary

Constructors

Constructor and Description
OntologyLoader(org.semanticweb.owlapi.model.OWLOntologyManager manager, org.semanticweb.owlapi.model.OWLDataFactory factory)
OntologyLoader(String ontologyName, File ontologyFile)

Method Summary

Methods

Modifier and Type	Method and Description
Set<org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom>	getAllAnnotationAxiom(org.semanticweb.owlapi.model.OWLClass cls)
List<Set<org.semanticweb.owlapi.model.OWLClass>>	getAssociatedClasses(org.semanticweb.owlapi.model.OWLClass cls)
Set<org.semanticweb.owlapi.model.OWLClass>	getChildClass(org.semanticweb.owlapi.model.OWLClass cls)
Map<String,org.semanticweb.owlapi.model.OWLClass>	getHashToRetrieveClass()
String	getLabel(org.semanticweb.owlapi.model.OWLEntity cls)
String	getOntologyFilePath()
String	getOntologyIRI()
String	getOntologyLabel()
String	getOntologyName()
Set<org.semanticweb.owlapi.model.OWLSubClassOfAxiom>	getSubClassAxiomsForSubClass(org.semanticweb.owlapi.model.OWLClass cls)
Set<org.semanticweb.owlapi.model.OWLSubClassOfAxiom>	getSubClassAxiomsForSuperClass(org.semanticweb.owlapi.model.OWLClass cls)
Set<String>	getSynonyms(org.semanticweb.owlapi.model.OWLClass cls)
Set<org.semanticweb.owlapi.model.OWLClass>	getTopClasses()
void	loadOntology(String ontologyName, File ontologyFile)
void	preProcessing()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OntologyLoader

public OntologyLoader(org.semanticweb.owlapi.model.OWLOntologyManager manager,
              org.semanticweb.owlapi.model.OWLDataFactory factory)

OntologyLoader

public OntologyLoader(String ontologyName,
              File ontologyFile)
               throws org.semanticweb.owlapi.model.OWLOntologyCreationException

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

Method Detail

loadOntology

public void loadOntology(String ontologyName,
                File ontologyFile)
                  throws org.semanticweb.owlapi.model.OWLOntologyCreationException

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

preProcessing

public void preProcessing()

getAllAnnotationAxiom

public Set<org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom> getAllAnnotationAxiom(org.semanticweb.owlapi.model.OWLClass cls)

getTopClasses

public Set<org.semanticweb.owlapi.model.OWLClass> getTopClasses()

getAssociatedClasses

public List<Set<org.semanticweb.owlapi.model.OWLClass>> getAssociatedClasses(org.semanticweb.owlapi.model.OWLClass cls)

getSynonyms

public Set<String> getSynonyms(org.semanticweb.owlapi.model.OWLClass cls)

getChildClass

public Set<org.semanticweb.owlapi.model.OWLClass> getChildClass(org.semanticweb.owlapi.model.OWLClass cls)

getLabel

public String getLabel(org.semanticweb.owlapi.model.OWLEntity cls)

getOntologyLabel

public String getOntologyLabel()

getOntologyIRI

public String getOntologyIRI()

getOntologyName

public String getOntologyName()

getOntologyFilePath

public String getOntologyFilePath()

getHashToRetrieveClass

public Map<String,org.semanticweb.owlapi.model.OWLClass> getHashToRetrieveClass()

getSubClassAxiomsForSuperClass

public Set<org.semanticweb.owlapi.model.OWLSubClassOfAxiom> getSubClassAxiomsForSuperClass(org.semanticweb.owlapi.model.OWLClass cls)

getSubClassAxiomsForSubClass

public Set<org.semanticweb.owlapi.model.OWLSubClassOfAxiom> getSubClassAxiomsForSubClass(org.semanticweb.owlapi.model.OWLClass cls)