org.molgenis.omx.biobankconnect.ontology.repository

Class AbstractOntologyRepository

java.lang.Object

org.molgenis.omx.biobankconnect.ontology.repository.AbstractOntologyRepository

All Implemented Interfaces:

Closeable, AutoCloseable, Iterable<Entity>, Repository

Direct Known Subclasses:

AbstractOntologyQueryRepository, OntologyIndexRepository, OntologyTermIndexRepository

public abstract class AbstractOntologyRepository
extends Object
implements Repository

Field Summary

Fields

Modifier and Type	Field and Description
static String	ALTERNATIVE_DEFINITION
static String	CHIDLREN
static String	ENTITY_TYPE
protected DefaultEntityMetaData	entityMetaData
protected String	entityName
static String	FIELDTYPE
static String	ID
static String	ILLEGAL_CHARACTERS_PATTERN
static String	ILLEGAL_CHARACTERS_REPLACEMENT
static String	LAST
static String	MULTI_WHITESPACES
static String	NODE_PATH
static String	NODE_PATH_REPLACEMENT_PATTERN
static String	ONTOLOGY_IRI
static String	ONTOLOGY_NAME
static String	ONTOLOGY_TERM
static String	ONTOLOGY_TERM_DEFINITION
static String	ONTOLOGY_TERM_IRI
static String	PARENT_NODE_PATH
static String	PARENT_ONTOLOGY_TERM_IRI
static String	ROOT
protected SearchService	searchService
static String	SINGLE_WHITESPACE
static String	SYNONYMS
static String	TYPE_ONTOLOGYTERM

Constructor Summary

Constructors

Constructor and Description
AbstractOntologyRepository(String entityName, SearchService searchService)

Method Summary

Methods

Modifier and Type	Method and Description
void	close()
EntityMetaData	getEntityMetaData()
String	getName()
abstract String	getUrl()
abstract <E extends Entity> Iterable<E>	iterator(Class<E> clazz)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable

iterator

Field Detail

entityMetaData

protected DefaultEntityMetaData entityMetaData

searchService

protected final SearchService searchService

entityName

protected final String entityName

ID

public static final String ID

See Also:

Constant Field Values

NODE_PATH

public static final String NODE_PATH

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Constant Field Values

PARENT_NODE_PATH

public static final String PARENT_NODE_PATH

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Constant Field Values

PARENT_ONTOLOGY_TERM_IRI

public static final String PARENT_ONTOLOGY_TERM_IRI

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Constant Field Values

FIELDTYPE

public static final String FIELDTYPE

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Constant Field Values

ROOT

public static final String ROOT

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Constant Field Values

LAST

public static final String LAST

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Constant Field Values

ONTOLOGY_IRI

public static final String ONTOLOGY_IRI

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Constant Field Values

ONTOLOGY_NAME

public static final String ONTOLOGY_NAME

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Constant Field Values

ONTOLOGY_TERM

public static final String ONTOLOGY_TERM

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Constant Field Values

ONTOLOGY_TERM_DEFINITION

public static final String ONTOLOGY_TERM_DEFINITION

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Constant Field Values

ONTOLOGY_TERM_IRI

public static final String ONTOLOGY_TERM_IRI

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Constant Field Values

SYNONYMS

public static final String SYNONYMS

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Constant Field Values

ALTERNATIVE_DEFINITION

public static final String ALTERNATIVE_DEFINITION

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Constant Field Values

ENTITY_TYPE

public static final String ENTITY_TYPE

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Constant Field Values

TYPE_ONTOLOGYTERM

public static final String TYPE_ONTOLOGYTERM

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Constant Field Values

CHIDLREN

public static final String CHIDLREN

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Constant Field Values

ILLEGAL_CHARACTERS_PATTERN

public static final String ILLEGAL_CHARACTERS_PATTERN

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Constant Field Values

ILLEGAL_CHARACTERS_REPLACEMENT

public static final String ILLEGAL_CHARACTERS_REPLACEMENT

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Constant Field Values

NODE_PATH_REPLACEMENT_PATTERN

public static final String NODE_PATH_REPLACEMENT_PATTERN

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Constant Field Values

MULTI_WHITESPACES

public static final String MULTI_WHITESPACES

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Constant Field Values

SINGLE_WHITESPACE

public static final String SINGLE_WHITESPACE

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Constant Field Values

Constructor Detail

AbstractOntologyRepository

@Autowired
public AbstractOntologyRepository(String entityName,
                                    SearchService searchService)

Method Detail

getEntityMetaData

public EntityMetaData getEntityMetaData()

Specified by:

getEntityMetaData in interface Repository

getName

public String getName()

Specified by:

getName in interface Repository

close

public void close()
           throws IOException

Specified by:

close in interface Closeable

Specified by:

close in interface AutoCloseable

Throws:

IOException

iterator

public abstract <E extends Entity> Iterable<E> iterator(Class<E> clazz)

Specified by:

iterator in interface Repository

getUrl

public abstract String getUrl()

Specified by:

getUrl in interface Repository