org.molgenis.omx.biobankconnect.ontologyannotator

Interface OntologyAnnotator

All Known Implementing Classes:

AsyncOntologyAnnotator

public interface OntologyAnnotator

Method Summary

Methods

Modifier and Type	Method and Description
void	annotate(Integer protocolId, List<String> documentTypes)
float	finishedPercentage()
void	initComplete()
boolean	isComplete()
boolean	isRunning()
void	removeAnnotations(Integer dataSetId)
void	updateIndex(UpdateIndexRequest request)
String	uploadFeatures(File uploadFile, String dataSetName)

Method Detail

annotate

void annotate(Integer protocolId,
            List<String> documentTypes)

removeAnnotations

void removeAnnotations(Integer dataSetId)

finishedPercentage

float finishedPercentage()

isRunning

boolean isRunning()

isComplete

boolean isComplete()

initComplete

void initComplete()

updateIndex

void updateIndex(UpdateIndexRequest request)

uploadFeatures

String uploadFeatures(File uploadFile,
                    String dataSetName)
                      throws IOException

Throws:

IOException