org.molgenis.omx.biobankconnect.wizard

Class BiobankConnectController

java.lang.Object

org.molgenis.framework.ui.MolgenisPluginController

org.molgenis.ui.wizard.AbstractWizardController

org.molgenis.omx.biobankconnect.wizard.BiobankConnectController

@Controller
@RequestMapping(value="/plugin/biobankconnect")
public class BiobankConnectController
extends AbstractWizardController

Field Summary

Fields

Modifier and Type	Field and Description
static String	ID
static String	URI

Fields inherited from class org.molgenis.framework.ui.MolgenisPluginController

PLUGIN_URI_PREFIX

Constructor Summary

Constructors

Constructor and Description
BiobankConnectController(ChooseCataloguePage chooseCataloguePager, OntologyAnnotatorPage ontologyAnnotatorPager, OntologyMatcherPage ontologyMatcherPager, MappingManagerPage mappingManagerPager, AlgorithmReportPage algorithmReportPager)

Method Summary

Methods

Modifier and Type	Method and Description
String	annotate(javax.servlet.http.HttpServletRequest request)
AlgorithmGenerateResponse	checkMatch()
protected Wizard	createWizard()
void	download(String requestString, javax.servlet.http.HttpServletResponse response)
String	importFeatures(String dataSetName, javax.servlet.http.Part file, BiobankConnectWizard biobankConnectWizard, javax.servlet.http.HttpServletRequest request, org.springframework.ui.Model model)
Map<String,Boolean>	isRunning(javax.servlet.http.HttpServletRequest request)
void	onInit(javax.servlet.http.HttpServletRequest request)
AlgorithmGenerateResponse	rematch(OntologyMatcherRequest request)
String	removeAnnotations(javax.servlet.http.HttpServletRequest request)
void	updateDocument(UpdateIndexRequest request)

Methods inherited from class org.molgenis.ui.wizard.AbstractWizardController

getJavascripts, getStylesheets, init, next, previous, restart, wizard

Methods inherited from class org.molgenis.framework.ui.MolgenisPluginController

getId, getUri

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ID

public static final String ID

See Also:

Constant Field Values

URI

public static final String URI

See Also:

Constant Field Values

Constructor Detail

BiobankConnectController

@Autowired
public BiobankConnectController(ChooseCataloguePage chooseCataloguePager,
                                  OntologyAnnotatorPage ontologyAnnotatorPager,
                                  OntologyMatcherPage ontologyMatcherPager,
                                  MappingManagerPage mappingManagerPager,
                                  AlgorithmReportPage algorithmReportPager)

Method Detail

onInit

public void onInit(javax.servlet.http.HttpServletRequest request)

Overrides:

onInit in class AbstractWizardController

createWizard

protected Wizard createWizard()

Specified by:

createWizard in class AbstractWizardController

importFeatures

@RequestMapping(value="/uploadfeatures",
                method=POST,
                headers="Content-Type=multipart/form-data")
public String importFeatures(@RequestParam
                                   String dataSetName,
                                   @RequestParam
                                   javax.servlet.http.Part file,
                                   @ModelAttribute(value="wizard")
                                   BiobankConnectWizard biobankConnectWizard,
                                   javax.servlet.http.HttpServletRequest request,
                                   org.springframework.ui.Model model)
                      throws IOException

Throws:

IOException

annotate

@RequestMapping(value="/annotate",
                method=POST)
public String annotate(javax.servlet.http.HttpServletRequest request)

removeAnnotations

@RequestMapping(value="/annotate/remove",
                method=POST)
public String removeAnnotations(javax.servlet.http.HttpServletRequest request)
                         throws Exception

Throws:

Exception

updateDocument

@RequestMapping(method=POST,
                value="/annotate/update",
                consumes="application/json")
@ResponseStatus(value=NO_CONTENT)
public void updateDocument(@RequestBody
                                                UpdateIndexRequest request)

rematch

@RequestMapping(method=POST,
                value="/rematch",
                consumes="application/json",
                produces="application/json")
@ResponseBody
public AlgorithmGenerateResponse rematch(@RequestBody
                                                            OntologyMatcherRequest request)

isRunning

@RequestMapping(value="/running",
                method=GET,
                produces="application/json")
@ResponseBody
public Map<String,Boolean> isRunning(javax.servlet.http.HttpServletRequest request)

checkMatch

@RequestMapping(method=GET,
                value="/progress",
                produces="application/json")
@ResponseBody
public AlgorithmGenerateResponse checkMatch()

download

@RequestMapping(value="/download",
                method=POST)
public void download(@RequestParam(value="request")
                           String requestString,
                           javax.servlet.http.HttpServletResponse response)
              throws IOException

Throws:

IOException