Uses of Class
org.molgenis.omx.observ.target.Ontology

Packages that use Ontology

org.molgenis.omx.observ.target
org.molgenis.omx.observ.target.db
org.molgenis.omx.observ.target.ui
org.molgenis.service

Uses of Ontology in org.molgenis.omx.observ.target

Methods in org.molgenis.omx.observ.target that return Ontology

Ontology	Ontology.create(Tuple tuple)
static Ontology	Ontology.findById(Database db, Integer id)
static Ontology	Ontology.findByIdentifier(Database db, String identifier)
Ontology	OntologyTerm.getOntology() Get the (Optional) The source ontology or controlled vocabulary list that ontology terms have been obtained from..
Ontology	OntologyTerm.getOntology(Database db) Deprecated.

Methods in org.molgenis.omx.observ.target that return types with arguments of type Ontology

static List<? extends Ontology>	Ontology.find(Database db, QueryRule... rules) Shorthand for db.find(Ontology.class, org.molgenis.framework.db.QueryRule ...
static Query<? extends Ontology>	Ontology.query(Database db) Shorthand for db.query(Ontology.class).

Methods in org.molgenis.omx.observ.target with parameters of type Ontology

void	OntologyTerm.setOntology(Ontology ontology) Set the (Optional) The source ontology or controlled vocabulary list that ontology terms have been obtained from..

Constructors in org.molgenis.omx.observ.target with parameters of type Ontology

Ontology(Ontology copyMe)
copy constructor

Uses of Ontology in org.molgenis.omx.observ.target.db

Methods in org.molgenis.omx.observ.target.db that return Ontology

Ontology

OntologyJpaMapper.create()

Methods in org.molgenis.omx.observ.target.db that return types with arguments of type Ontology

List<Ontology>

OntologyJpaMapper.createList(int size) Return EMPTY list of given allocated size

Methods in org.molgenis.omx.observ.target.db with parameters of type Ontology

void	OntologyJpaMapper.create(Ontology entity) This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
void	OntologyJpaMapper.destroy(Ontology ontology)
void	OntologyJpaMapper.edit(Ontology ontology)

Method parameters in org.molgenis.omx.observ.target.db with type arguments of type Ontology

int	OntologyJpaMapper.executeAdd(List<? extends Ontology> entities)
int	OntologyJpaMapper.executeRemove(List<? extends Ontology> entities)
int	OntologyJpaMapper.executeUpdate(List<? extends Ontology> entities)
void	OntologyJpaMapper.prepareFileAttachements(List<Ontology> entities, File baseDir)
void	OntologyJpaMapper.resolveForeignKeys(List<Ontology> entities)
boolean	OntologyJpaMapper.saveFileAttachements(List<Ontology> entities, File baseDir)

Uses of Ontology in org.molgenis.omx.observ.target.ui

Methods in org.molgenis.omx.observ.target.ui that return types with arguments of type Ontology

Class<Ontology>

OntologyForm.getEntityClass()

Constructors in org.molgenis.omx.observ.target.ui with parameters of type Ontology

OntologyForm(Ontology entity)

Uses of Ontology in org.molgenis.service

Methods in org.molgenis.service that return Ontology

Ontology	OntologyService.create(Ontology ontology)
Ontology	OntologyService.read(Integer id)

Methods in org.molgenis.service that return types with arguments of type Ontology

Iterable<Ontology>	OntologyService.readAll()
EntityPager<Ontology>	OntologyService.readAll(int start, int num, List<QueryRule> queryRules)

Methods in org.molgenis.service with parameters of type Ontology

Ontology	OntologyService.create(Ontology ontology)
void	OntologyService.update(Ontology ontology)