Uses of Class
org.molgenis.omx.observ.target.OntologyTerm

Packages that use OntologyTerm

org.molgenis.omx.observ
org.molgenis.omx.observ.target
org.molgenis.omx.observ.target.db
org.molgenis.omx.observ.target.ui
org.molgenis.service

Uses of OntologyTerm in org.molgenis.omx.observ

Methods in org.molgenis.omx.observ that return OntologyTerm

OntologyTerm	ObservableFeature.getDefinition() Get the The concept that is being measured in a specific way..
OntologyTerm	Category.getDefinition() Get the The category that is being measured in a specific way..
OntologyTerm	ObservableFeature.getDefinition(Database db) Deprecated.
OntologyTerm	Category.getDefinition(Database db) Deprecated.
OntologyTerm	Protocol.getProtocolType() Get the classification of protocol.
OntologyTerm	Protocol.getProtocolType(Database db) Deprecated.
OntologyTerm	ObservableFeature.getUnit() Get the (Optional) Reference to the well-defined measurement unit used to observe this feature (if feature is that concrete).
OntologyTerm	ObservableFeature.getUnit(Database db) Deprecated.

Methods in org.molgenis.omx.observ with parameters of type OntologyTerm

void	ObservableFeature.setDefinition(OntologyTerm definition) Set the The concept that is being measured in a specific way..
void	Category.setDefinition(OntologyTerm definition) Set the The category that is being measured in a specific way..
void	Protocol.setProtocolType(OntologyTerm protocolType) Set the classification of protocol.
void	ObservableFeature.setUnit(OntologyTerm unit) Set the (Optional) Reference to the well-defined measurement unit used to observe this feature (if feature is that concrete).

Uses of OntologyTerm in org.molgenis.omx.observ.target

Subclasses of OntologyTerm in org.molgenis.omx.observ.target

class	Accession Accession: An external identifier for an annotation.
class	Species Species: Ontology terms for species.

Methods in org.molgenis.omx.observ.target that return OntologyTerm

OntologyTerm	OntologyTerm.create(Tuple tuple)
static OntologyTerm	OntologyTerm.findById(Database db, Integer id)
static OntologyTerm	OntologyTerm.findByIdentifier(Database db, String identifier)
static OntologyTerm	OntologyTerm.findByOntologyTermAccession(Database db, Integer ontology, String termAccession)
OntologyTerm	Panel.getPanelType() Get the Indicate the type of Panel (example: Sample panel, AssayedPanel, Natural=wild type, Parental=parents of a cross, F1=First generation of cross, RCC=Recombinant congenic, CSS=chromosome substitution).
OntologyTerm	Panel.getPanelType(Database db) Deprecated.

Methods in org.molgenis.omx.observ.target that return types with arguments of type OntologyTerm

static List<? extends OntologyTerm>	OntologyTerm.find(Database db, QueryRule... rules) Shorthand for db.find(OntologyTerm.class, org.molgenis.framework.db.QueryRule ...
static Query<? extends OntologyTerm>	OntologyTerm.query(Database db) Shorthand for db.query(OntologyTerm.class).

Methods in org.molgenis.omx.observ.target with parameters of type OntologyTerm

void	Panel.setPanelType(OntologyTerm panelType) Set the Indicate the type of Panel (example: Sample panel, AssayedPanel, Natural=wild type, Parental=parents of a cross, F1=First generation of cross, RCC=Recombinant congenic, CSS=chromosome substitution).

Constructors in org.molgenis.omx.observ.target with parameters of type OntologyTerm

OntologyTerm(OntologyTerm copyMe)
copy constructor

Uses of OntologyTerm in org.molgenis.omx.observ.target.db

Methods in org.molgenis.omx.observ.target.db that return OntologyTerm

OntologyTerm

OntologyTermJpaMapper.create()

Methods in org.molgenis.omx.observ.target.db that return types with arguments of type OntologyTerm

List<OntologyTerm>

OntologyTermJpaMapper.createList(int size) Return EMPTY list of given allocated size

Methods in org.molgenis.omx.observ.target.db with parameters of type OntologyTerm

void	OntologyTermJpaMapper.create(OntologyTerm entity) This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
void	OntologyTermJpaMapper.destroy(OntologyTerm ontologyTerm)
void	OntologyTermJpaMapper.edit(OntologyTerm ontologyTerm)

Method parameters in org.molgenis.omx.observ.target.db with type arguments of type OntologyTerm

int	OntologyTermJpaMapper.executeAdd(List<? extends OntologyTerm> entities)
int	OntologyTermJpaMapper.executeRemove(List<? extends OntologyTerm> entities)
int	OntologyTermJpaMapper.executeUpdate(List<? extends OntologyTerm> entities)
void	OntologyTermJpaMapper.prepareFileAttachements(List<OntologyTerm> entities, File baseDir)
void	OntologyTermJpaMapper.resolveForeignKeys(List<OntologyTerm> entities)
boolean	OntologyTermJpaMapper.saveFileAttachements(List<OntologyTerm> entities, File baseDir)

Uses of OntologyTerm in org.molgenis.omx.observ.target.ui

Methods in org.molgenis.omx.observ.target.ui that return types with arguments of type OntologyTerm

Class<OntologyTerm>

OntologyTermForm.getEntityClass()

Constructors in org.molgenis.omx.observ.target.ui with parameters of type OntologyTerm

OntologyTermForm(OntologyTerm entity)

Uses of OntologyTerm in org.molgenis.service

Methods in org.molgenis.service that return OntologyTerm

OntologyTerm	OntologyTermService.create(OntologyTerm ontologyTerm)
OntologyTerm	OntologyTermService.read(Integer id)

Methods in org.molgenis.service that return types with arguments of type OntologyTerm

Iterable<OntologyTerm>	OntologyTermService.readAll()
EntityPager<OntologyTerm>	OntologyTermService.readAll(int start, int num, List<QueryRule> queryRules)

Methods in org.molgenis.service with parameters of type OntologyTerm

OntologyTerm	OntologyTermService.create(OntologyTerm ontologyTerm)
void	OntologyTermService.update(OntologyTerm ontologyTerm)