Serialized Form

Package org.molgenis.omx.converters

Class org.molgenis.omx.converters.ValueConverterException extends Exception implements Serializable

serialVersionUID: 1L

Package org.molgenis.omx.core

Class org.molgenis.omx.core.MolgenisEntity extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

name

String name

type_

String type_

className

String className

Class org.molgenis.omx.core.MolgenisFile extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

identifier

String identifier

name

String name

extension

String extension

Class org.molgenis.omx.core.RuntimeProperty extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

identifier

String identifier

name

String name

value

String value

Package org.molgenis.omx.decorators

Class org.molgenis.omx.decorators.MolgenisFileHandler.TypeUnknownException extends Exception implements Serializable

serialVersionUID: 7026641720938935426L

Package org.molgenis.omx.observ

Class org.molgenis.omx.observ.Category extends Characteristic implements Serializable

serialVersionUID: 1L

Serialized Fields

observableFeature

ObservableFeature observableFeature

observableFeature_id

Integer observableFeature_id

observableFeature_Identifier

String observableFeature_Identifier

valueCode

String valueCode

definition

OntologyTerm definition

definition_id

Integer definition_id

definition_Identifier

String definition_Identifier

isMissing

Boolean isMissing

Class org.molgenis.omx.observ.Characteristic extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

identifier

String identifier

name

String name

__Type

String __Type

__Type_label

String __Type_label

description

String description

valueMrefValueCollection

Collection<E> valueMrefValueCollection

Class org.molgenis.omx.observ.DataSet extends Characteristic implements Serializable

serialVersionUID: 1L

Serialized Fields

protocolUsed

Protocol protocolUsed

protocolUsed_id

Integer protocolUsed_id

protocolUsed_Identifier

String protocolUsed_Identifier

startTime

Date startTime

endTime

Date endTime

Class org.molgenis.omx.observ.ObservableFeature extends Characteristic implements Serializable

serialVersionUID: 1L

Serialized Fields

unit

OntologyTerm unit

unit_id

Integer unit_id

unit_Identifier

String unit_Identifier

definition

OntologyTerm definition

definition_id

Integer definition_id

definition_Identifier

String definition_Identifier

dataType

String dataType

dataType_label

String dataType_label

temporal

Boolean temporal

featuresProtocolCollection

Collection<E> featuresProtocolCollection

Class org.molgenis.omx.observ.ObservationSet extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

partOfDataSet

DataSet partOfDataSet

partOfDataSet_id

Integer partOfDataSet_id

partOfDataSet_Identifier

String partOfDataSet_Identifier

time

Date time

Class org.molgenis.omx.observ.ObservationTarget extends Characteristic implements Serializable

serialVersionUID: 1L

Class org.molgenis.omx.observ.ObservedValue extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

observationSet

ObservationSet observationSet

observationSet_id

Integer observationSet_id

feature

ObservableFeature feature

feature_id

Integer feature_id

feature_Identifier

String feature_Identifier

value

Value value

value_id

Integer value_id

Class org.molgenis.omx.observ.Protocol extends Characteristic implements Serializable

serialVersionUID: 1L

Serialized Fields

protocolType

OntologyTerm protocolType

protocolType_id

Integer protocolType_id

protocolType_Identifier

String protocolType_Identifier

subprotocols

List<E> subprotocols

subprotocols_id

List<E> subprotocols_id

subprotocols_Identifier

List<E> subprotocols_Identifier

features

List<E> features

features_id

List<E> features_id

features_Identifier

List<E> features_Identifier

subprotocolsProtocolCollection

Collection<E> subprotocolsProtocolCollection

Class org.molgenis.omx.observ.Protocol_Features extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

autoid

Integer autoid

features

ObservableFeature features

features_id

Integer features_id

features_Identifier

String features_Identifier

protocol

Protocol protocol

protocol_id

Integer protocol_id

protocol_Identifier

String protocol_Identifier

Class org.molgenis.omx.observ.Protocol_Subprotocols extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

autoid

Integer autoid

subprotocols

Protocol subprotocols

subprotocols_id

Integer subprotocols_id

subprotocols_Identifier

String subprotocols_Identifier

protocol

Protocol protocol

protocol_id

Integer protocol_id

protocol_Identifier

String protocol_Identifier

Package org.molgenis.omx.observ.target

Class org.molgenis.omx.observ.target.Accession extends OntologyTerm implements Serializable

serialVersionUID: 1L

Class org.molgenis.omx.observ.target.Individual extends ObservationTarget implements Serializable

serialVersionUID: 1L

Serialized Fields

mother

Individual mother

mother_id

Integer mother_id

mother_Identifier

String mother_Identifier

father

Individual father

father_id

Integer father_id

father_Identifier

String father_Identifier

individualsPanelCollection

Collection<E> individualsPanelCollection

Class org.molgenis.omx.observ.target.Ontology extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

identifier

String identifier

name

String name

ontologyAccession

String ontologyAccession

ontologyURI

String ontologyURI

Class org.molgenis.omx.observ.target.OntologyTerm extends Characteristic implements Serializable

serialVersionUID: 1L

Serialized Fields

ontology

Ontology ontology

ontology_id

Integer ontology_id

ontology_Identifier

String ontology_Identifier

termAccession

String termAccession

definition

String definition

Class org.molgenis.omx.observ.target.Panel extends ObservationTarget implements Serializable

serialVersionUID: 1L

Serialized Fields

panelType

OntologyTerm panelType

panelType_id

Integer panelType_id

panelType_Identifier

String panelType_Identifier

numberOfIndividuals

Integer numberOfIndividuals

species

Species species

species_id

Integer species_id

species_Identifier

String species_Identifier

individuals

List<E> individuals

individuals_id

List<E> individuals_id

individuals_Identifier

List<E> individuals_Identifier

Class org.molgenis.omx.observ.target.Panel_Individuals extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

autoid

Integer autoid

individuals

Individual individuals

individuals_id

Integer individuals_id

individuals_Identifier

String individuals_Identifier

panel

Panel panel

panel_id

Integer panel_id

panel_Identifier

String panel_Identifier

Class org.molgenis.omx.observ.target.PanelSource extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

currentPanel

Panel currentPanel

currentPanel_id

Integer currentPanel_id

currentPanel_Identifier

String currentPanel_Identifier

sourcePanel

Panel sourcePanel

sourcePanel_id

Integer sourcePanel_id

sourcePanel_Identifier

String sourcePanel_Identifier

numberOfIndividuals

Integer numberOfIndividuals

selectionCriteria

String selectionCriteria

Class org.molgenis.omx.observ.target.Species extends OntologyTerm implements Serializable

serialVersionUID: 1L

Package org.molgenis.omx.observ.value

Class org.molgenis.omx.observ.value.BoolValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

Boolean value

Class org.molgenis.omx.observ.value.CategoricalValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

Category value

value_id

Integer value_id

value_Identifier

String value_Identifier

Class org.molgenis.omx.observ.value.DateTimeValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

Date value

Class org.molgenis.omx.observ.value.DateValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

Date value

Class org.molgenis.omx.observ.value.DecimalValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

Double value

Class org.molgenis.omx.observ.value.EmailValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

String value

Class org.molgenis.omx.observ.value.HtmlValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

String value

Class org.molgenis.omx.observ.value.HyperlinkValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

String value

Class org.molgenis.omx.observ.value.IntValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

Integer value

Class org.molgenis.omx.observ.value.LongValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

Long value

Class org.molgenis.omx.observ.value.MrefValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

List<E> value

value_id

List<E> value_id

value_Identifier

List<E> value_Identifier

Class org.molgenis.omx.observ.value.MrefValue_Value extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

autoid

Integer autoid

value

Characteristic value

value_id

Integer value_id

value_Identifier

String value_Identifier

mrefValue

MrefValue mrefValue

mrefValue_id

Integer mrefValue_id

Class org.molgenis.omx.observ.value.StringValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

String value

Class org.molgenis.omx.observ.value.TextValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

String value

Class org.molgenis.omx.observ.value.Value extends AbstractEntity implements Serializable

serialVersionUID: 1L

Serialized Fields

id

Integer id

__Type

String __Type

__Type_label

String __Type_label

Class org.molgenis.omx.observ.value.XrefValue extends Value implements Serializable

serialVersionUID: 1L

Serialized Fields

value

Characteristic value

value_id

Integer value_id

value_Identifier

String value_Identifier