org.molgenis.omx.auth

Class Person

java.lang.Object

org.molgenis.util.AbstractEntity

org.molgenis.omx.observ.Characteristic

org.molgenis.omx.auth.Person

All Implemented Interfaces:

Serializable, PersonInterface, Autoid, Identifiable, Entity

@Entity
public class Person
extends Characteristic
implements PersonInterface

Person: Person represents one or more people involved with an Investigation. This may include authors on a paper, lab personnel or PIs. Person has last name, firstname, mid initial, address, contact and email. A Person role is included to represent how a Person is involved with an investigation. For submission to repository purposes an allowed value is 'submitter' and the term is present in the MGED Ontology, an alternative use could represent job title. An Example from ArrayExpress is E-MTAB-506 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-506/E-TABM-506.idf.txt. .
The FUGE equivalent to Person is FuGE::Person. .

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	ADDRESS
static String	AFFILIATION
static String	AFFILIATION_NAME
static String	CITY
static String	COUNTRY
static String	DEPARTMENT
static String	EMAIL
static String	FAX
static String	FIRSTNAME
static String	ID
static String	LASTNAME
static String	MIDINITIALS
static String	PHONE
static String	ROLES
static String	ROLES_IDENTIFIER
static String	TITLE
static String	TOLLFREEPHONE

Fields inherited from class org.molgenis.omx.observ.Characteristic

__TYPE, DESCRIPTION, IDENTIFIER, NAME

Constructor Summary

Constructors

Constructor and Description
Person()
Person(Person copyMe) copy constructor

Method Summary

Methods

Modifier and Type	Method and Description
Person	create(Entity entity)
boolean	equals(Object obj)
static List<? extends Person>	find(Database db, QueryRule... rules) Shorthand for db.find(Person.class, org.molgenis.framework.db.QueryRule ...
static Person	findByEmail(Database db, String email)
static Person	findById(Database db, Integer id)
static Person	findByIdentifier(Database db, String identifier)
Object	get(String name) Generic getter.
String	getAddress() Get the The address of the Contact..
String	getAddress(Database db) Deprecated.
Integer	getAffiliation_Id()
String	getAffiliation_Name() Get a pretty label Name for cross reference Affiliation to Institute.Id.
Institute	getAffiliation() Get the Affiliation.
Institute	getAffiliation(Database db) Deprecated.
String	getCity() Get the Added from the old definition of MolgenisUser.
String	getCity(Database db) Deprecated.
String	getCountry() Get the Added from the old definition of MolgenisUser.
String	getCountry(Database db) Deprecated.
String	getDepartment() Get the Added from the old definition of MolgenisUser.
String	getDepartment(Database db) Deprecated.
String	getEmail() Get the The email address of the Contact..
String	getEmail(Database db) Deprecated.
String	getFax() Get the The fax number of the Contact..
String	getFax(Database db) Deprecated.
Vector<String>	getFields()
Vector<String>	getFields(boolean skipAutoIds) Get the names of all public properties of Person.
String	getFields(String sep) Deprecated.
String	getFirstName() Get the First Name.
String	getFirstName(Database db) Deprecated.
String	getIdField()
Object	getIdValue()
List<String>	getLabelFields()
String	getLastName() Get the Last Name.
String	getLastName(Database db) Deprecated.
String	getMidInitials() Get the Mid Initials.
String	getMidInitials(Database db) Deprecated.
String	getPhone() Get the The telephone number of the Contact including the suitable area codes..
String	getPhone(Database db) Deprecated.
Integer	getRoles_Id()
String	getRoles_Identifier() Get a pretty label Identifier for cross reference Roles to PersonRole.Id.
PersonRole	getRoles() Get the Indicate role of the contact, e.g.
PersonRole	getRoles(Database db) Deprecated.
String	getTitle() Get the An academic title, e.g.
String	getTitle(Database db) Deprecated.
String	getTollFreePhone() Get the A toll free phone number for the Contact, including suitable area codes..
String	getTollFreePhone(Database db) Deprecated.
String	getValues(String sep) Deprecated.
String	getXrefIdFieldName(String fieldName)
int	hashCode()
static Query<? extends Person>	query(Database db) Shorthand for db.query(Person.class).
void	set(Entity entity, boolean strict)
void	setAddress(String address) Set the The address of the Contact..
void	setAffiliation_Id(Integer affiliation_id) Set foreign key for field affiliation.
void	setAffiliation_Name(String affiliation_Name) Set a pretty label for cross reference Affiliation to Institute.Id.
void	setAffiliation(Institute affiliation) Set the Affiliation.
void	setAffiliation(Integer affiliation_id)
void	setCity(String city) Set the Added from the old definition of MolgenisUser.
void	setCountry(String country) Set the Added from the old definition of MolgenisUser.
void	setDepartment(String department) Set the Added from the old definition of MolgenisUser.
void	setEmail(String email) Set the The email address of the Contact..
void	setFax(String fax) Set the The fax number of the Contact..
void	setFirstName(String firstName) Set the First Name.
void	setLastName(String lastName) Set the Last Name.
void	setMidInitials(String midInitials) Set the Mid Initials.
void	setPhone(String phone) Set the The telephone number of the Contact including the suitable area codes..
void	setRoles_Id(Integer roles_id) Set foreign key for field roles.
void	setRoles_Identifier(String roles_Identifier) Set a pretty label for cross reference Roles to PersonRole.Id.
void	setRoles(Integer roles_id)
void	setRoles(PersonRole roles) Set the Indicate role of the contact, e.g.
void	setTitle(String title) Set the An academic title, e.g.
void	setTollFreePhone(String tollFreePhone) Set the A toll free phone number for the Contact, including suitable area codes..
String	toString()
String	toString(boolean verbose)
void	validate()

Methods inherited from class org.molgenis.omx.observ.Characteristic

get__Type, get__Type, get__TypeLabel, get__TypeOptions, getDescription, getDescription, getId, getIdentifier, getIdentifier, getName, getName, getValueMrefValueCollection, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollection

Methods inherited from class org.molgenis.util.AbstractEntity

getLabelValue, getValues, isObjectRepresentation, isReadonly, set, set, setReadonly, setValuesFromString, string2date

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.util.Entity

getLabelValue, getValues, isReadonly, set, set, setReadonly

Field Detail

ADDRESS

public static final String ADDRESS

See Also:

Constant Field Values

PHONE

public static final String PHONE

See Also:

Constant Field Values

EMAIL

public static final String EMAIL

See Also:

Constant Field Values

FAX

public static final String FAX

See Also:

Constant Field Values

TOLLFREEPHONE

public static final String TOLLFREEPHONE

See Also:

Constant Field Values

CITY

public static final String CITY

See Also:

Constant Field Values

COUNTRY

public static final String COUNTRY

See Also:

Constant Field Values

FIRSTNAME

public static final String FIRSTNAME

See Also:

Constant Field Values

MIDINITIALS

public static final String MIDINITIALS

See Also:

Constant Field Values

LASTNAME

public static final String LASTNAME

See Also:

Constant Field Values

TITLE

public static final String TITLE

See Also:

Constant Field Values

AFFILIATION

public static final String AFFILIATION

See Also:

Constant Field Values

AFFILIATION_NAME

public static final String AFFILIATION_NAME

See Also:

Constant Field Values

DEPARTMENT

public static final String DEPARTMENT

See Also:

Constant Field Values

ROLES

public static final String ROLES

See Also:

Constant Field Values

ROLES_IDENTIFIER

public static final String ROLES_IDENTIFIER

See Also:

Constant Field Values

ID

public static final String ID

See Also:

Constant Field Values

Constructor Detail

Person

public Person()

Person

public Person(Person copyMe)
       throws Exception

copy constructor

Throws:

Exception

Method Detail

query

public static Query<? extends Person> query(Database db)

Shorthand for db.query(Person.class).

find

public static List<? extends Person> find(Database db,
                          QueryRule... rules)
                                   throws DatabaseException

Shorthand for db.find(Person.class, org.molgenis.framework.db.QueryRule ... rules).

Throws:

DatabaseException

findById

public static Person findById(Database db,
              Integer id)
                       throws DatabaseException

Throws:

DatabaseException

findByIdentifier

public static Person findByIdentifier(Database db,
                      String identifier)
                               throws DatabaseException

Throws:

DatabaseException

findByEmail

public static Person findByEmail(Database db,
                 String email)
                          throws DatabaseException

Throws:

DatabaseException

getAddress

public String getAddress()

Get the The address of the Contact..

Specified by:

getAddress in interface PersonInterface

Returns:

address.

getAddress

@Deprecated
public String getAddress(Database db)

Deprecated.

setAddress

public void setAddress(String address)

Set the The address of the Contact..

Specified by:

setAddress in interface PersonInterface

Parameters:

address -

getPhone

public String getPhone()

Get the The telephone number of the Contact including the suitable area codes..

Specified by:

getPhone in interface PersonInterface

Returns:

phone.

getPhone

@Deprecated
public String getPhone(Database db)

Deprecated.

setPhone

public void setPhone(String phone)

Set the The telephone number of the Contact including the suitable area codes..

Specified by:

setPhone in interface PersonInterface

Parameters:

phone -

getEmail

public String getEmail()

Get the The email address of the Contact..

Specified by:

getEmail in interface PersonInterface

Returns:

email.

getEmail

@Deprecated
public String getEmail(Database db)

Deprecated.

setEmail

public void setEmail(String email)

Set the The email address of the Contact..

Specified by:

setEmail in interface PersonInterface

Parameters:

email -

getFax

public String getFax()

Get the The fax number of the Contact..

Specified by:

getFax in interface PersonInterface

Returns:

fax.

getFax

@Deprecated
public String getFax(Database db)

Deprecated.

setFax

public void setFax(String fax)

Set the The fax number of the Contact..

Specified by:

setFax in interface PersonInterface

Parameters:

fax -

getTollFreePhone

public String getTollFreePhone()

Get the A toll free phone number for the Contact, including suitable area codes..

Specified by:

getTollFreePhone in interface PersonInterface

Returns:

tollFreePhone.

getTollFreePhone

@Deprecated
public String getTollFreePhone(Database db)

Deprecated.

setTollFreePhone

public void setTollFreePhone(String tollFreePhone)

Set the A toll free phone number for the Contact, including suitable area codes..

Specified by:

setTollFreePhone in interface PersonInterface

Parameters:

tollFreePhone -

getCity

public String getCity()

Get the Added from the old definition of MolgenisUser. City of this contact..

Specified by:

getCity in interface PersonInterface

Returns:

city.

getCity

@Deprecated
public String getCity(Database db)

Deprecated.

setCity

public void setCity(String city)

Set the Added from the old definition of MolgenisUser. City of this contact..

Specified by:

setCity in interface PersonInterface

Parameters:

city -

getCountry

public String getCountry()

Get the Added from the old definition of MolgenisUser. Country of this contact..

Specified by:

getCountry in interface PersonInterface

Returns:

country.

getCountry

@Deprecated
public String getCountry(Database db)

Deprecated.

setCountry

public void setCountry(String country)

Set the Added from the old definition of MolgenisUser. Country of this contact..

Specified by:

setCountry in interface PersonInterface

Parameters:

country -

getFirstName

public String getFirstName()

Get the First Name.

Specified by:

getFirstName in interface PersonInterface

Returns:

firstName.

getFirstName

@Deprecated
public String getFirstName(Database db)

Deprecated.

setFirstName

public void setFirstName(String firstName)

Set the First Name.

Specified by:

setFirstName in interface PersonInterface

Parameters:

firstName -

getMidInitials

public String getMidInitials()

Get the Mid Initials.

Specified by:

getMidInitials in interface PersonInterface

Returns:

midInitials.

getMidInitials

@Deprecated
public String getMidInitials(Database db)

Deprecated.

setMidInitials

public void setMidInitials(String midInitials)

Set the Mid Initials.

Specified by:

setMidInitials in interface PersonInterface

Parameters:

midInitials -

getLastName

public String getLastName()

Get the Last Name.

Specified by:

getLastName in interface PersonInterface

Returns:

lastName.

getLastName

@Deprecated
public String getLastName(Database db)

Deprecated.

setLastName

public void setLastName(String lastName)

Set the Last Name.

Specified by:

setLastName in interface PersonInterface

Parameters:

lastName -

getTitle

public String getTitle()

Get the An academic title, e.g. Prof.dr, PhD.

Specified by:

getTitle in interface PersonInterface

Returns:

title.

getTitle

@Deprecated
public String getTitle(Database db)

Deprecated.

setTitle

public void setTitle(String title)

Set the An academic title, e.g. Prof.dr, PhD.

Specified by:

setTitle in interface PersonInterface

Parameters:

title -

getAffiliation

public Institute getAffiliation()

Get the Affiliation.

Specified by:

getAffiliation in interface PersonInterface

Returns:

affiliation.

getAffiliation

@Deprecated
public Institute getAffiliation(Database db)

Deprecated.

setAffiliation

public void setAffiliation(Institute affiliation)

Set the Affiliation.

Specified by:

setAffiliation in interface PersonInterface

Parameters:

affiliation -

setAffiliation_Id

public void setAffiliation_Id(Integer affiliation_id)

Set foreign key for field affiliation. This will erase any foreign key objects currently set. FIXME: can we autoload the new object?

Specified by:

setAffiliation_Id in interface PersonInterface

setAffiliation

public void setAffiliation(Integer affiliation_id)

getAffiliation_Id

public Integer getAffiliation_Id()

Specified by:

getAffiliation_Id in interface PersonInterface

getAffiliation_Name

public String getAffiliation_Name()

Get a pretty label Name for cross reference Affiliation to Institute.Id.

Specified by:

getAffiliation_Name in interface PersonInterface

setAffiliation_Name

public void setAffiliation_Name(String affiliation_Name)

Set a pretty label for cross reference Affiliation to Institute.Id. Implies setAffiliation(null) until save

Specified by:

setAffiliation_Name in interface PersonInterface

getDepartment

public String getDepartment()

Get the Added from the old definition of MolgenisUser. Department of this contact..

Specified by:

getDepartment in interface PersonInterface

Returns:

department.

getDepartment

@Deprecated
public String getDepartment(Database db)

Deprecated.

setDepartment

public void setDepartment(String department)

Set the Added from the old definition of MolgenisUser. Department of this contact..

Specified by:

setDepartment in interface PersonInterface

Parameters:

department -

getRoles

public PersonRole getRoles()

Get the Indicate role of the contact, e.g. lab worker or PI. Changed from mref to xref in oct 2011..

Specified by:

getRoles in interface PersonInterface

Returns:

roles.

getRoles

@Deprecated
public PersonRole getRoles(Database db)

Deprecated.

setRoles

public void setRoles(PersonRole roles)

Set the Indicate role of the contact, e.g. lab worker or PI. Changed from mref to xref in oct 2011..

Specified by:

setRoles in interface PersonInterface

Parameters:

roles -

setRoles_Id

public void setRoles_Id(Integer roles_id)

Set foreign key for field roles. This will erase any foreign key objects currently set. FIXME: can we autoload the new object?

Specified by:

setRoles_Id in interface PersonInterface

setRoles

public void setRoles(Integer roles_id)

getRoles_Id

public Integer getRoles_Id()

Specified by:

getRoles_Id in interface PersonInterface

getRoles_Identifier

public String getRoles_Identifier()

Get a pretty label Identifier for cross reference Roles to PersonRole.Id.

Specified by:

getRoles_Identifier in interface PersonInterface

setRoles_Identifier

public void setRoles_Identifier(String roles_Identifier)

Set a pretty label for cross reference Roles to PersonRole.Id. Implies setRoles(null) until save

Specified by:

setRoles_Identifier in interface PersonInterface

get

public Object get(String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

Overrides:

get in class Characteristic

validate

public void validate()
              throws DatabaseException

Specified by:

validate in interface Entity

Overrides:

validate in class Characteristic

Throws:

DatabaseException

set

public void set(Entity entity,
       boolean strict)
         throws Exception

Specified by:

set in interface Entity

Overrides:

set in class Characteristic

Throws:

Exception

toString

public String toString()

Overrides:

toString in class Characteristic

toString

public String toString(boolean verbose)

Overrides:

toString in class Characteristic

getFields

public Vector<String> getFields(boolean skipAutoIds)

Get the names of all public properties of Person.

Specified by:

getFields in interface Entity

Overrides:

getFields in class Characteristic

getFields

public Vector<String> getFields()

Specified by:

getFields in interface Entity

Overrides:

getFields in class Characteristic

getIdField

public String getIdField()

Specified by:

getIdField in interface Entity

Overrides:

getIdField in class Characteristic

getLabelFields

public List<String> getLabelFields()

Specified by:

getLabelFields in interface Entity

Overrides:

getLabelFields in class Characteristic

getFields

@Deprecated
public String getFields(String sep)

Deprecated.

Specified by:

getFields in interface Entity

Overrides:

getFields in class Characteristic

getIdValue

public Object getIdValue()

Specified by:

getIdValue in interface Entity

Overrides:

getIdValue in class Characteristic

getXrefIdFieldName

public String getXrefIdFieldName(String fieldName)

Specified by:

getXrefIdFieldName in interface Entity

Overrides:

getXrefIdFieldName in class Characteristic

getValues

@Deprecated
public String getValues(String sep)

Deprecated.

Specified by:

getValues in interface Entity

Overrides:

getValues in class Characteristic

create

public Person create(Entity entity)
              throws Exception

Specified by:

create in interface Entity

Overrides:

create in class Characteristic

Throws:

Exception

equals

public boolean equals(Object obj)

Overrides:

equals in class Characteristic

hashCode

public int hashCode()

Overrides:

hashCode in class Characteristic