| Package | Description |
|---|---|
| org.molgenis.omx.auth | |
| org.molgenis.omx.core | |
| org.molgenis.omx.observ | |
| org.molgenis.omx.observ.target | |
| org.molgenis.omx.observ.value |
| Modifier and Type | Class and Description |
|---|---|
class |
Institute
Institute: A contact is either a person or an organization.
|
class |
Person
Person:
Person represents one or more people involved with an Investigation.
|
class |
PersonRole
PersonRole: Seperate type of ontologyTerm to administrate roles.
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
Identifiable
Identifiable: This interface assigns an automatic 'id', globally
unique identifier
'identifier' field, and possibly not unique 'name'
to all entities that implement it.
|
| Modifier and Type | Class and Description |
|---|---|
class |
MolgenisEntity
MolgenisEntity: Referenceable catalog of entity names, menus, forms and
plugins.
|
class |
MolgenisFile
MolgenisFile:
Helper entity to deal with files.
|
class |
RuntimeProperty
RuntimeProperty: .
|
| Modifier and Type | Class and Description |
|---|---|
class |
Category
Category: Category is partOf ObservableFeature to define categories for an
ObservableFeature, such as the categorical answer codes that are often used in Questionaires.
|
class |
Characteristic
Characteristic: Characteristics are yes-no statements about things in
the world.
|
class |
DataSet
DataSet: Container for one or more observations that are measured
using the same protocol and by the same performer(s).
|
class |
ObservableFeature
ObservableFeature:
ObservableFeature defines anything that can be observed.
|
class |
ObservationSet
ObservationSet: In practice: Observation is one row within a DataSet.
|
class |
ObservationTarget
ObservationTarget: ObservationTarget defines subjects of observation, such
as Individual, Panel, Sample, etc.
|
class |
ObservedValue
ObservedValue:
Generic storage of values as part of one observation event.
|
class |
Protocol
Protocol:
The Protocol class defines parameterizable descriptions of
(analysis)methods.
|
| Modifier and Type | Class and Description |
|---|---|
class |
Accession
Accession:
An external identifier for an annotation.
|
class |
Individual
Individual: The Individuals class defines the subjects that are
used
as observation target.
|
class |
Ontology
Ontology: Ontology defines a reference to an ontology or
controlled vocabulary from which well-defined and stable (ontology)
terms can be obtained.
|
class |
OntologyTerm
OntologyTerm:
OntologyTerm defines a single entry (term) from an
ontology or a controlled vocabulary (defined by Ontology).
|
class |
Panel
Panel: The Panel class defines groups of individuals based on
cohort design, case/controls, families, etc.
|
class |
PanelSource
PanelSource: PanelSources is partOf Panel to define how panels are
related panels, founder panels,
such as overlap,
selection criteria,
getting assayed panel from a
sample panel, etc.
|
class |
Species
Species: Ontology terms for species.
|
| Modifier and Type | Class and Description |
|---|---|
class |
BoolValue
BoolValue: .
|
class |
CategoricalValue
CategoricalValue: .
|
class |
DateTimeValue
DateTimeValue: .
|
class |
DateValue
DateValue: .
|
class |
DecimalValue
DecimalValue: .
|
class |
EmailValue
EmailValue: .
|
class |
HtmlValue
HtmlValue: .
|
class |
HyperlinkValue
HyperlinkValue: .
|
class |
IntValue
IntValue: .
|
class |
LongValue
LongValue: .
|
class |
MrefValue
MrefValue: .
|
class |
StringValue
StringValue: .
|
class |
TextValue
TextValue: .
|
class |
Value
Value: .
|
class |
XrefValue
XrefValue: .
|
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