| Package | Description |
|---|---|
| org.molgenis.omx.auth | |
| org.molgenis.omx.core | |
| org.molgenis.omx.decorators | |
| org.molgenis.omx.observ | |
| org.molgenis.omx.observ.target |
| Modifier and Type | Class and Description |
|---|---|
class |
Institute
Institute: A contact is either a person or an organization.
|
class |
Person
Person:
Person represents one or more people involved with an Investigation.
|
class |
PersonRole
PersonRole: Seperate type of ontologyTerm to administrate roles.
|
| Modifier and Type | Class and Description |
|---|---|
class |
MolgenisFile
MolgenisFile:
Helper entity to deal with files.
|
class |
RuntimeProperty
RuntimeProperty: .
|
| Modifier and Type | Method and Description |
|---|---|
static <E extends Identifiable> |
NameConvention.validateEntityNames(List<E> entities)
Validate names of Entities by wrapping NameConvention.validateEntityName(name)
|
static <E extends Identifiable> |
NameConvention.validateEntityNamesStrict(List<E> entities)
Validate names of Entities by wrapping NameConvention.validateEntityNameStrict(name)
|
| Modifier and Type | Class and Description |
|---|---|
class |
Category
Category: Category is partOf ObservableFeature to define categories for an
ObservableFeature, such as the categorical answer codes that are often used in Questionaires.
|
class |
Characteristic
Characteristic: Characteristics are yes-no statements about things in
the world.
|
class |
DataSet
DataSet: Container for one or more observations that are measured
using the same protocol and by the same performer(s).
|
class |
ObservableFeature
ObservableFeature:
ObservableFeature defines anything that can be observed.
|
class |
ObservationTarget
ObservationTarget: ObservationTarget defines subjects of observation, such
as Individual, Panel, Sample, etc.
|
class |
Protocol
Protocol:
The Protocol class defines parameterizable descriptions of
(analysis)methods.
|
| Modifier and Type | Class and Description |
|---|---|
class |
Accession
Accession:
An external identifier for an annotation.
|
class |
Individual
Individual: The Individuals class defines the subjects that are
used
as observation target.
|
class |
Ontology
Ontology: Ontology defines a reference to an ontology or
controlled vocabulary from which well-defined and stable (ontology)
terms can be obtained.
|
class |
OntologyTerm
OntologyTerm:
OntologyTerm defines a single entry (term) from an
ontology or a controlled vocabulary (defined by Ontology).
|
class |
Panel
Panel: The Panel class defines groups of individuals based on
cohort design, case/controls, families, etc.
|
class |
Species
Species: Ontology terms for species.
|
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