Uses of Class
org.molgenis.omx.observ.Characteristic

Packages that use Characteristic

Package	Description
org.molgenis.omx.auth
org.molgenis.omx.observ
org.molgenis.omx.observ.db
org.molgenis.omx.observ.target
org.molgenis.omx.observ.value
org.molgenis.service

Uses of Characteristic in org.molgenis.omx.auth

Subclasses of Characteristic in org.molgenis.omx.auth

Modifier and Type	Class and Description
class	Institute Institute: A contact is either a person or an organization.
class	Person Person: Person represents one or more people involved with an Investigation.
class	PersonRole PersonRole: Seperate type of ontologyTerm to administrate roles.

Uses of Characteristic in org.molgenis.omx.observ

Subclasses of Characteristic in org.molgenis.omx.observ

Modifier and Type	Class and Description
class	Category Category: Category is partOf ObservableFeature to define categories for an ObservableFeature, such as the categorical answer codes that are often used in Questionaires.
class	DataSet DataSet: Container for one or more observations that are measured using the same protocol and by the same performer(s).
class	ObservableFeature ObservableFeature: ObservableFeature defines anything that can be observed.
class	ObservationTarget ObservationTarget: ObservationTarget defines subjects of observation, such as Individual, Panel, Sample, etc.
class	Protocol Protocol: The Protocol class defines parameterizable descriptions of (analysis)methods.

Methods in org.molgenis.omx.observ that return Characteristic

Modifier and Type	Method and Description
Characteristic	Characteristic.create(Entity entity)
static Characteristic	Characteristic.findById(Database db, Integer id)
static Characteristic	Characteristic.findByIdentifier(Database db, String identifier)

Methods in org.molgenis.omx.observ that return types with arguments of type Characteristic

Modifier and Type	Method and Description
static List<? extends Characteristic>	Characteristic.find(Database db, QueryRule... rules) Shorthand for db.find(Characteristic.class, org.molgenis.framework.db.QueryRule ...
static Query<? extends Characteristic>	Characteristic.query(Database db) Shorthand for db.query(Characteristic.class).

Constructors in org.molgenis.omx.observ with parameters of type Characteristic

Constructor and Description
Characteristic(Characteristic copyMe) copy constructor

Uses of Characteristic in org.molgenis.omx.observ.db

Classes in org.molgenis.omx.observ.db with type parameters of type Characteristic

Modifier and Type	Class and Description
class	CharacteristicSecurityDecorator<E extends Characteristic> TODO add column level security filters

Methods in org.molgenis.omx.observ.db that return Characteristic

Modifier and Type	Method and Description
Characteristic	CharacteristicJpaMapper.create()

Methods in org.molgenis.omx.observ.db that return types with arguments of type Characteristic

Modifier and Type	Method and Description
List<Characteristic>	CharacteristicJpaMapper.createList(int size) Return EMPTY list of given allocated size

Methods in org.molgenis.omx.observ.db with parameters of type Characteristic

Modifier and Type	Method and Description
void	CharacteristicJpaMapper.create(Characteristic entity) This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
void	CharacteristicJpaMapper.destroy(Characteristic characteristic)
void	CharacteristicJpaMapper.edit(Characteristic characteristic)

Method parameters in org.molgenis.omx.observ.db with type arguments of type Characteristic

Modifier and Type	Method and Description
int	CharacteristicJpaMapper.executeAdd(List<? extends Characteristic> entities)
int	CharacteristicJpaMapper.executeRemove(List<? extends Characteristic> entities)
int	CharacteristicJpaMapper.executeUpdate(List<? extends Characteristic> entities)
void	CharacteristicJpaMapper.prepareFileAttachements(List<Characteristic> entities, File baseDir)
void	CharacteristicJpaMapper.resolveForeignKeys(List<Characteristic> entities)
boolean	CharacteristicJpaMapper.saveFileAttachements(List<Characteristic> entities, File baseDir)

Uses of Characteristic in org.molgenis.omx.observ.target

Subclasses of Characteristic in org.molgenis.omx.observ.target

Modifier and Type	Class and Description
class	Accession Accession: An external identifier for an annotation.
class	Individual Individual: The Individuals class defines the subjects that are used as observation target.
class	OntologyTerm OntologyTerm: OntologyTerm defines a single entry (term) from an ontology or a controlled vocabulary (defined by Ontology).
class	Panel Panel: The Panel class defines groups of individuals based on cohort design, case/controls, families, etc.
class	Species Species: Ontology terms for species.

Uses of Characteristic in org.molgenis.omx.observ.value

Methods in org.molgenis.omx.observ.value that return Characteristic

Modifier and Type	Method and Description
Characteristic	XrefValue.getValue() Get the Value.
Characteristic	MrefValue_Value.getValue() Get the .
Characteristic	XrefValue.getValue(Database db) Deprecated.
Characteristic	MrefValue_Value.getValue(Database db) Deprecated.

Methods in org.molgenis.omx.observ.value that return types with arguments of type Characteristic

Modifier and Type	Method and Description
List<Characteristic>	MrefValue.getValue() Get the Value.
List<Characteristic>	MrefValue.getValue(Database db) Deprecated.

Methods in org.molgenis.omx.observ.value with parameters of type Characteristic

Modifier and Type	Method and Description
void	MrefValue.setValue(Characteristic... value)
void	XrefValue.setValue(Characteristic value) Set the Value.
void	MrefValue_Value.setValue(Characteristic value) Set the .

Method parameters in org.molgenis.omx.observ.value with type arguments of type Characteristic

Modifier and Type	Method and Description
void	MrefValue.setValue(List<Characteristic> value) Set the Value.

Uses of Characteristic in org.molgenis.service

Methods in org.molgenis.service that return Characteristic

Modifier and Type	Method and Description
Characteristic	CharacteristicService.create(Characteristic characteristic)
Characteristic	CharacteristicService.read(Integer id)

Methods in org.molgenis.service that return types with arguments of type Characteristic

Modifier and Type	Method and Description
Iterable<Characteristic>	CharacteristicService.readAll()
EntityPager<Characteristic>	CharacteristicService.readAll(int start, int num, List<QueryRule> queryRules)

Methods in org.molgenis.service with parameters of type Characteristic

Modifier and Type	Method and Description
Characteristic	CharacteristicService.create(Characteristic characteristic)
void	CharacteristicService.update(Characteristic characteristic)