Uses of Class
org.molgenis.omx.observ.ObservableFeature

Packages that use ObservableFeature

Package	Description
org.molgenis.omx.converters
org.molgenis.omx.observ
org.molgenis.omx.observ.db
org.molgenis.omx.observ.target
org.molgenis.service

Uses of ObservableFeature in org.molgenis.omx.converters

Methods in org.molgenis.omx.converters with parameters of type ObservableFeature

Modifier and Type	Method and Description
DateTimeValue	TupleToDateTimeValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
BoolValue	TupleToBoolValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
XrefValue	TupleToXrefValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
DateValue	TupleToDateValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
CategoricalValue	TupleToCategoricalValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
S	TupleToValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature) Converts a tuple column value to a value entity
LongValue	TupleToLongValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
StringValue	TupleToStringValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
Value	ValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
MrefValue	TupleToMrefValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
HyperlinkValue	TupleToHyperlinkValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
IntValue	TupleToIntValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
DecimalValue	TupleToDecimalValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
HtmlValue	TupleToHtmlValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
TextValue	TupleToTextValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
EmailValue	TupleToEmailValueConverter.fromTuple(Tuple tuple, String colName, ObservableFeature feature)
DateTimeValue	TupleToDateTimeValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
BoolValue	TupleToBoolValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
XrefValue	TupleToXrefValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
DateValue	TupleToDateValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
CategoricalValue	TupleToCategoricalValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
S	TupleToValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value) Updates an existing value by converting a tuple column
LongValue	TupleToLongValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
StringValue	TupleToStringValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
Value	ValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
MrefValue	TupleToMrefValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
HyperlinkValue	TupleToHyperlinkValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
IntValue	TupleToIntValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
DecimalValue	TupleToDecimalValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
HtmlValue	TupleToHtmlValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
TextValue	TupleToTextValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)
EmailValue	TupleToEmailValueConverter.updateFromTuple(Tuple tuple, String colName, ObservableFeature feature, Value value)

Uses of ObservableFeature in org.molgenis.omx.observ

Methods in org.molgenis.omx.observ that return ObservableFeature

Modifier and Type	Method and Description
ObservableFeature	ObservableFeature.create(Entity entity)
static ObservableFeature	ObservableFeature.findById(Database db, Integer id)
static ObservableFeature	ObservableFeature.findByIdentifier(Database db, String identifier)
ObservableFeature	ObservedValue.getFeature() Get the References the ObservableFeature that this observation was made on.
ObservableFeature	ObservedValue.getFeature(Database db) Deprecated.
ObservableFeature	Protocol_Features.getFeatures() Get the .
ObservableFeature	Protocol_Features.getFeatures(Database db) Deprecated.
ObservableFeature	ObservableFeature_Definitions.getObservableFeature() Get the .
ObservableFeature	Category.getObservableFeature() Get the The Measurement these permitted values are part of..
ObservableFeature	ObservableFeature_Definitions.getObservableFeature(Database db) Deprecated.
ObservableFeature	Category.getObservableFeature(Database db) Deprecated.
ObservableFeature	Protocol_RequiredFeatures.getRequiredFeatures() Get the .
ObservableFeature	Protocol_RequiredFeatures.getRequiredFeatures(Database db) Deprecated.

Methods in org.molgenis.omx.observ that return types with arguments of type ObservableFeature

Modifier and Type	Method and Description
static List<? extends ObservableFeature>	ObservableFeature.find(Database db, QueryRule... rules) Shorthand for db.find(ObservableFeature.class, org.molgenis.framework.db.QueryRule ...
List<ObservableFeature>	Protocol.getFeatures() Get the parameters (in/out) that are used or produced by this protocol..
List<ObservableFeature>	Protocol.getFeatures(Database db) Deprecated.
List<ObservableFeature>	Protocol.getRequiredFeatures() Get the ...........
List<ObservableFeature>	Protocol.getRequiredFeatures(Database db) Deprecated.
static Query<? extends ObservableFeature>	ObservableFeature.query(Database db) Shorthand for db.query(ObservableFeature.class).

Methods in org.molgenis.omx.observ with parameters of type ObservableFeature

Modifier and Type	Method and Description
void	ObservedValue.setFeature(ObservableFeature feature) Set the References the ObservableFeature that this observation was made on.
void	Protocol.setFeatures(ObservableFeature... features)
void	Protocol_Features.setFeatures(ObservableFeature features) Set the .
void	ObservableFeature_Definitions.setObservableFeature(ObservableFeature observableFeature) Set the .
void	Category.setObservableFeature(ObservableFeature observableFeature) Set the The Measurement these permitted values are part of..
void	Protocol.setRequiredFeatures(ObservableFeature... requiredFeatures)
void	Protocol_RequiredFeatures.setRequiredFeatures(ObservableFeature requiredFeatures) Set the .

Method parameters in org.molgenis.omx.observ with type arguments of type ObservableFeature

Modifier and Type	Method and Description
void	Protocol.setFeatures(List<ObservableFeature> features) Set the parameters (in/out) that are used or produced by this protocol..
void	Protocol.setRequiredFeatures(List<ObservableFeature> requiredFeatures) Set the ...........

Constructors in org.molgenis.omx.observ with parameters of type ObservableFeature

Constructor and Description
ObservableFeature(ObservableFeature copyMe) copy constructor

Uses of ObservableFeature in org.molgenis.omx.observ.db

Classes in org.molgenis.omx.observ.db with type parameters of type ObservableFeature

Modifier and Type	Class and Description
class	ObservableFeatureSecurityDecorator<E extends ObservableFeature> TODO add column level security filters

Methods in org.molgenis.omx.observ.db that return ObservableFeature

Modifier and Type	Method and Description
ObservableFeature	ObservableFeatureJpaMapper.create()

Methods in org.molgenis.omx.observ.db that return types with arguments of type ObservableFeature

Modifier and Type	Method and Description
List<ObservableFeature>	ObservableFeatureJpaMapper.createList(int size) Return EMPTY list of given allocated size

Methods in org.molgenis.omx.observ.db with parameters of type ObservableFeature

Modifier and Type	Method and Description
void	ObservableFeatureJpaMapper.create(ObservableFeature entity) This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
void	ObservableFeatureJpaMapper.destroy(ObservableFeature observableFeature)
void	ObservableFeatureJpaMapper.edit(ObservableFeature observableFeature)

Method parameters in org.molgenis.omx.observ.db with type arguments of type ObservableFeature

Modifier and Type	Method and Description
int	ObservableFeatureJpaMapper.executeAdd(List<? extends ObservableFeature> entities)
int	ObservableFeatureJpaMapper.executeRemove(List<? extends ObservableFeature> entities)
int	ObservableFeatureJpaMapper.executeUpdate(List<? extends ObservableFeature> entities)
void	ObservableFeatureJpaMapper.prepareFileAttachements(List<ObservableFeature> entities, File baseDir)
void	ObservableFeatureJpaMapper.resolveForeignKeys(List<ObservableFeature> entities)
boolean	ObservableFeatureJpaMapper.saveFileAttachements(List<ObservableFeature> entities, File baseDir)

Uses of ObservableFeature in org.molgenis.omx.observ.target

Methods in org.molgenis.omx.observ.target that return types with arguments of type ObservableFeature

Modifier and Type	Method and Description
Collection<ObservableFeature>	OntologyTerm.getDefinitionsObservableFeatureCollection()
Collection<ObservableFeature>	OntologyTerm.getDefinitionsObservableFeatureCollection(Database db)

Method parameters in org.molgenis.omx.observ.target with type arguments of type ObservableFeature

Modifier and Type	Method and Description
void	OntologyTerm.setDefinitionsObservableFeatureCollection(Collection<ObservableFeature> collection)

Uses of ObservableFeature in org.molgenis.service

Methods in org.molgenis.service that return ObservableFeature

Modifier and Type	Method and Description
ObservableFeature	ObservableFeatureService.create(ObservableFeature observableFeature)
ObservableFeature	ObservableFeatureService.read(Integer id)

Methods in org.molgenis.service that return types with arguments of type ObservableFeature

Modifier and Type	Method and Description
Iterable<ObservableFeature>	ObservableFeatureService.readAll()
EntityPager<ObservableFeature>	ObservableFeatureService.readAll(int start, int num, List<QueryRule> queryRules)

Methods in org.molgenis.service with parameters of type ObservableFeature

Modifier and Type	Method and Description
ObservableFeature	ObservableFeatureService.create(ObservableFeature observableFeature)
void	ObservableFeatureService.update(ObservableFeature observableFeature)