| Package | Description |
|---|---|
| org.molgenis.omx.converters | |
| org.molgenis.omx.observ | |
| org.molgenis.omx.observ.db | |
| org.molgenis.omx.observ.target | |
| org.molgenis.service |
| Modifier and Type | Method and Description |
|---|---|
DateTimeValue |
TupleToDateTimeValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
BoolValue |
TupleToBoolValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
XrefValue |
TupleToXrefValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
DateValue |
TupleToDateValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
CategoricalValue |
TupleToCategoricalValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
S |
TupleToValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature)
Converts a tuple column value to a value entity
|
LongValue |
TupleToLongValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
StringValue |
TupleToStringValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
Value |
ValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
MrefValue |
TupleToMrefValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
HyperlinkValue |
TupleToHyperlinkValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
IntValue |
TupleToIntValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
DecimalValue |
TupleToDecimalValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
HtmlValue |
TupleToHtmlValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
TextValue |
TupleToTextValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
EmailValue |
TupleToEmailValueConverter.fromTuple(Tuple tuple,
String colName,
ObservableFeature feature) |
DateTimeValue |
TupleToDateTimeValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
BoolValue |
TupleToBoolValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
XrefValue |
TupleToXrefValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
DateValue |
TupleToDateValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
CategoricalValue |
TupleToCategoricalValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
S |
TupleToValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value)
Updates an existing value by converting a tuple column
|
LongValue |
TupleToLongValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
StringValue |
TupleToStringValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
Value |
ValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
MrefValue |
TupleToMrefValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
HyperlinkValue |
TupleToHyperlinkValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
IntValue |
TupleToIntValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
DecimalValue |
TupleToDecimalValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
HtmlValue |
TupleToHtmlValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
TextValue |
TupleToTextValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
EmailValue |
TupleToEmailValueConverter.updateFromTuple(Tuple tuple,
String colName,
ObservableFeature feature,
Value value) |
| Modifier and Type | Method and Description |
|---|---|
ObservableFeature |
ObservableFeature.create(Entity entity) |
static ObservableFeature |
ObservableFeature.findById(Database db,
Integer id) |
static ObservableFeature |
ObservableFeature.findByIdentifier(Database db,
String identifier) |
ObservableFeature |
ObservedValue.getFeature()
Get the References the ObservableFeature that this observation was made on.
|
ObservableFeature |
ObservedValue.getFeature(Database db)
Deprecated.
|
ObservableFeature |
Protocol_Features.getFeatures()
Get the .
|
ObservableFeature |
Protocol_Features.getFeatures(Database db)
Deprecated.
|
ObservableFeature |
ObservableFeature_Definitions.getObservableFeature()
Get the .
|
ObservableFeature |
Category.getObservableFeature()
Get the The Measurement these permitted values are part of..
|
ObservableFeature |
ObservableFeature_Definitions.getObservableFeature(Database db)
Deprecated.
|
ObservableFeature |
Category.getObservableFeature(Database db)
Deprecated.
|
ObservableFeature |
Protocol_RequiredFeatures.getRequiredFeatures()
Get the .
|
ObservableFeature |
Protocol_RequiredFeatures.getRequiredFeatures(Database db)
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
static List<? extends ObservableFeature> |
ObservableFeature.find(Database db,
QueryRule... rules)
Shorthand for db.find(ObservableFeature.class, org.molgenis.framework.db.QueryRule ...
|
List<ObservableFeature> |
Protocol.getFeatures()
Get the parameters (in/out) that are used or produced by this protocol..
|
List<ObservableFeature> |
Protocol.getFeatures(Database db)
Deprecated.
|
List<ObservableFeature> |
Protocol.getRequiredFeatures()
Get the ...........
|
List<ObservableFeature> |
Protocol.getRequiredFeatures(Database db)
Deprecated.
|
static Query<? extends ObservableFeature> |
ObservableFeature.query(Database db)
Shorthand for db.query(ObservableFeature.class).
|
| Modifier and Type | Method and Description |
|---|---|
void |
ObservedValue.setFeature(ObservableFeature feature)
Set the References the ObservableFeature that this observation was made on.
|
void |
Protocol.setFeatures(ObservableFeature... features) |
void |
Protocol_Features.setFeatures(ObservableFeature features)
Set the .
|
void |
ObservableFeature_Definitions.setObservableFeature(ObservableFeature observableFeature)
Set the .
|
void |
Category.setObservableFeature(ObservableFeature observableFeature)
Set the The Measurement these permitted values are part of..
|
void |
Protocol.setRequiredFeatures(ObservableFeature... requiredFeatures) |
void |
Protocol_RequiredFeatures.setRequiredFeatures(ObservableFeature requiredFeatures)
Set the .
|
| Modifier and Type | Method and Description |
|---|---|
void |
Protocol.setFeatures(List<ObservableFeature> features)
Set the parameters (in/out) that are used or produced by this protocol..
|
void |
Protocol.setRequiredFeatures(List<ObservableFeature> requiredFeatures)
Set the ...........
|
| Constructor and Description |
|---|
ObservableFeature(ObservableFeature copyMe)
copy constructor
|
| Modifier and Type | Class and Description |
|---|---|
class |
ObservableFeatureSecurityDecorator<E extends ObservableFeature>
TODO add column level security filters
|
| Modifier and Type | Method and Description |
|---|---|
ObservableFeature |
ObservableFeatureJpaMapper.create() |
| Modifier and Type | Method and Description |
|---|---|
List<ObservableFeature> |
ObservableFeatureJpaMapper.createList(int size)
Return EMPTY list of given allocated size
|
| Modifier and Type | Method and Description |
|---|---|
void |
ObservableFeatureJpaMapper.create(ObservableFeature entity)
This method first saves the objects that are being refered to by entity,
then the entity itself and
finally the objects that refer to this object
|
void |
ObservableFeatureJpaMapper.destroy(ObservableFeature observableFeature) |
void |
ObservableFeatureJpaMapper.edit(ObservableFeature observableFeature) |
| Modifier and Type | Method and Description |
|---|---|
int |
ObservableFeatureJpaMapper.executeAdd(List<? extends ObservableFeature> entities) |
int |
ObservableFeatureJpaMapper.executeRemove(List<? extends ObservableFeature> entities) |
int |
ObservableFeatureJpaMapper.executeUpdate(List<? extends ObservableFeature> entities) |
void |
ObservableFeatureJpaMapper.prepareFileAttachements(List<ObservableFeature> entities,
File baseDir) |
void |
ObservableFeatureJpaMapper.resolveForeignKeys(List<ObservableFeature> entities) |
boolean |
ObservableFeatureJpaMapper.saveFileAttachements(List<ObservableFeature> entities,
File baseDir) |
| Modifier and Type | Method and Description |
|---|---|
Collection<ObservableFeature> |
OntologyTerm.getDefinitionsObservableFeatureCollection() |
Collection<ObservableFeature> |
OntologyTerm.getDefinitionsObservableFeatureCollection(Database db) |
| Modifier and Type | Method and Description |
|---|---|
void |
OntologyTerm.setDefinitionsObservableFeatureCollection(Collection<ObservableFeature> collection) |
| Modifier and Type | Method and Description |
|---|---|
ObservableFeature |
ObservableFeatureService.create(ObservableFeature observableFeature) |
ObservableFeature |
ObservableFeatureService.read(Integer id) |
| Modifier and Type | Method and Description |
|---|---|
Iterable<ObservableFeature> |
ObservableFeatureService.readAll() |
EntityPager<ObservableFeature> |
ObservableFeatureService.readAll(int start,
int num,
List<QueryRule> queryRules) |
| Modifier and Type | Method and Description |
|---|---|
ObservableFeature |
ObservableFeatureService.create(ObservableFeature observableFeature) |
void |
ObservableFeatureService.update(ObservableFeature observableFeature) |
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