| Package | Description |
|---|---|
| org.molgenis.omx.observ | |
| org.molgenis.omx.observ.db | |
| org.molgenis.omx.protocol | |
| org.molgenis.omx.utils | |
| org.molgenis.service |
| Modifier and Type | Method and Description |
|---|---|
Protocol |
Protocol.create(Entity entity) |
static Protocol |
Protocol.findById(Database db,
Integer id) |
static Protocol |
Protocol.findByIdentifier(Database db,
String identifier) |
Protocol |
Protocol_Subprotocols.getProtocol()
Get the .
|
Protocol |
Protocol_RequiredFeatures.getProtocol()
Get the .
|
Protocol |
Protocol_Features.getProtocol()
Get the .
|
Protocol |
Protocol_Subprotocols.getProtocol(Database db)
Deprecated.
|
Protocol |
Protocol_RequiredFeatures.getProtocol(Database db)
Deprecated.
|
Protocol |
Protocol_Features.getProtocol(Database db)
Deprecated.
|
Protocol |
DataSet.getProtocolUsed()
Get the Reference to the protocol that is being used (if available).
|
Protocol |
DataSet.getProtocolUsed(Database db)
Deprecated.
|
Protocol |
Protocol_Subprotocols.getSubprotocols()
Get the .
|
Protocol |
Protocol_Subprotocols.getSubprotocols(Database db)
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
static List<? extends Protocol> |
Protocol.find(Database db,
QueryRule... rules)
Shorthand for db.find(Protocol.class, org.molgenis.framework.db.QueryRule ...
|
Collection<Protocol> |
ObservableFeature.getFeaturesProtocolCollection() |
Collection<Protocol> |
ObservableFeature.getFeaturesProtocolCollection(Database db) |
Collection<Protocol> |
ObservableFeature.getRequiredFeaturesProtocolCollection() |
Collection<Protocol> |
ObservableFeature.getRequiredFeaturesProtocolCollection(Database db) |
List<Protocol> |
Protocol.getSubprotocols()
Get the Subprotocols of this protocol.
|
List<Protocol> |
Protocol.getSubprotocols(Database db)
Deprecated.
|
Collection<Protocol> |
Protocol.getSubprotocolsProtocolCollection() |
Collection<Protocol> |
Protocol.getSubprotocolsProtocolCollection(Database db) |
static Query<? extends Protocol> |
Protocol.query(Database db)
Shorthand for db.query(Protocol.class).
|
| Modifier and Type | Method and Description |
|---|---|
void |
Protocol_Subprotocols.setProtocol(Protocol protocol)
Set the .
|
void |
Protocol_RequiredFeatures.setProtocol(Protocol protocol)
Set the .
|
void |
Protocol_Features.setProtocol(Protocol protocol)
Set the .
|
void |
DataSet.setProtocolUsed(Protocol protocolUsed)
Set the Reference to the protocol that is being used (if available).
|
void |
Protocol.setSubprotocols(Protocol... subprotocols) |
void |
Protocol_Subprotocols.setSubprotocols(Protocol subprotocols)
Set the .
|
| Modifier and Type | Method and Description |
|---|---|
void |
ObservableFeature.setFeaturesProtocolCollection(Collection<Protocol> collection) |
void |
ObservableFeature.setRequiredFeaturesProtocolCollection(Collection<Protocol> collection) |
void |
Protocol.setSubprotocols(List<Protocol> subprotocols)
Set the Subprotocols of this protocol.
|
void |
Protocol.setSubprotocolsProtocolCollection(Collection<Protocol> collection) |
| Constructor and Description |
|---|
Protocol(Protocol copyMe)
copy constructor
|
| Modifier and Type | Class and Description |
|---|---|
class |
ProtocolSecurityDecorator<E extends Protocol>
TODO add column level security filters
|
| Modifier and Type | Method and Description |
|---|---|
Protocol |
ProtocolJpaMapper.create() |
| Modifier and Type | Method and Description |
|---|---|
List<Protocol> |
ProtocolJpaMapper.createList(int size)
Return EMPTY list of given allocated size
|
| Modifier and Type | Method and Description |
|---|---|
void |
ProtocolJpaMapper.create(Protocol entity)
This method first saves the objects that are being refered to by entity,
then the entity itself and
finally the objects that refer to this object
|
void |
ProtocolJpaMapper.destroy(Protocol protocol) |
void |
ProtocolJpaMapper.edit(Protocol protocol) |
| Modifier and Type | Method and Description |
|---|---|
int |
ProtocolJpaMapper.executeAdd(List<? extends Protocol> entities) |
int |
ProtocolJpaMapper.executeRemove(List<? extends Protocol> entities) |
int |
ProtocolJpaMapper.executeUpdate(List<? extends Protocol> entities) |
void |
ProtocolJpaMapper.prepareFileAttachements(List<Protocol> entities,
File baseDir) |
void |
ProtocolJpaMapper.resolveForeignKeys(List<Protocol> entities) |
boolean |
ProtocolJpaMapper.saveFileAttachements(List<Protocol> entities,
File baseDir) |
| Constructor and Description |
|---|
ProtocolTable(Protocol protocol,
Database db) |
| Modifier and Type | Method and Description |
|---|---|
static List<Protocol> |
ProtocolUtils.getProtocolDescendants(Protocol protocol)
Returns the descendants of the given protocol including the given protocol
|
static List<Protocol> |
ProtocolUtils.getProtocolDescendants(Protocol protocol,
boolean includeProtocol)
Returns the descendants of the given protocol
|
| Modifier and Type | Method and Description |
|---|---|
static List<Protocol> |
ProtocolUtils.getProtocolDescendants(Protocol protocol)
Returns the descendants of the given protocol including the given protocol
|
static List<Protocol> |
ProtocolUtils.getProtocolDescendants(Protocol protocol,
boolean includeProtocol)
Returns the descendants of the given protocol
|
| Modifier and Type | Method and Description |
|---|---|
Protocol |
ProtocolService.create(Protocol protocol) |
Protocol |
ProtocolService.read(Integer id) |
| Modifier and Type | Method and Description |
|---|---|
Iterable<Protocol> |
ProtocolService.readAll() |
EntityPager<Protocol> |
ProtocolService.readAll(int start,
int num,
List<QueryRule> queryRules) |
| Modifier and Type | Method and Description |
|---|---|
Protocol |
ProtocolService.create(Protocol protocol) |
void |
ProtocolService.update(Protocol protocol) |
Copyright © 2013. All Rights Reserved.