Uses of Class
org.molgenis.omx.observ.Protocol

Packages that use Protocol

Package	Description
org.molgenis.omx.observ
org.molgenis.omx.observ.db
org.molgenis.omx.protocol
org.molgenis.omx.utils
org.molgenis.service

Uses of Protocol in org.molgenis.omx.observ

Methods in org.molgenis.omx.observ that return Protocol

Modifier and Type	Method and Description
Protocol	Protocol.create(Entity entity)
static Protocol	Protocol.findById(Database db, Integer id)
static Protocol	Protocol.findByIdentifier(Database db, String identifier)
Protocol	Protocol_Subprotocols.getProtocol() Get the .
Protocol	Protocol_RequiredFeatures.getProtocol() Get the .
Protocol	Protocol_Features.getProtocol() Get the .
Protocol	Protocol_Subprotocols.getProtocol(Database db) Deprecated.
Protocol	Protocol_RequiredFeatures.getProtocol(Database db) Deprecated.
Protocol	Protocol_Features.getProtocol(Database db) Deprecated.
Protocol	DataSet.getProtocolUsed() Get the Reference to the protocol that is being used (if available).
Protocol	DataSet.getProtocolUsed(Database db) Deprecated.
Protocol	Protocol_Subprotocols.getSubprotocols() Get the .
Protocol	Protocol_Subprotocols.getSubprotocols(Database db) Deprecated.

Methods in org.molgenis.omx.observ that return types with arguments of type Protocol

Modifier and Type	Method and Description
static List<? extends Protocol>	Protocol.find(Database db, QueryRule... rules) Shorthand for db.find(Protocol.class, org.molgenis.framework.db.QueryRule ...
Collection<Protocol>	ObservableFeature.getFeaturesProtocolCollection()
Collection<Protocol>	ObservableFeature.getFeaturesProtocolCollection(Database db)
Collection<Protocol>	ObservableFeature.getRequiredFeaturesProtocolCollection()
Collection<Protocol>	ObservableFeature.getRequiredFeaturesProtocolCollection(Database db)
List<Protocol>	Protocol.getSubprotocols() Get the Subprotocols of this protocol.
List<Protocol>	Protocol.getSubprotocols(Database db) Deprecated.
Collection<Protocol>	Protocol.getSubprotocolsProtocolCollection()
Collection<Protocol>	Protocol.getSubprotocolsProtocolCollection(Database db)
static Query<? extends Protocol>	Protocol.query(Database db) Shorthand for db.query(Protocol.class).

Methods in org.molgenis.omx.observ with parameters of type Protocol

Modifier and Type	Method and Description
void	Protocol_Subprotocols.setProtocol(Protocol protocol) Set the .
void	Protocol_RequiredFeatures.setProtocol(Protocol protocol) Set the .
void	Protocol_Features.setProtocol(Protocol protocol) Set the .
void	DataSet.setProtocolUsed(Protocol protocolUsed) Set the Reference to the protocol that is being used (if available).
void	Protocol.setSubprotocols(Protocol... subprotocols)
void	Protocol_Subprotocols.setSubprotocols(Protocol subprotocols) Set the .

Method parameters in org.molgenis.omx.observ with type arguments of type Protocol

Modifier and Type	Method and Description
void	ObservableFeature.setFeaturesProtocolCollection(Collection<Protocol> collection)
void	ObservableFeature.setRequiredFeaturesProtocolCollection(Collection<Protocol> collection)
void	Protocol.setSubprotocols(List<Protocol> subprotocols) Set the Subprotocols of this protocol.
void	Protocol.setSubprotocolsProtocolCollection(Collection<Protocol> collection)

Constructors in org.molgenis.omx.observ with parameters of type Protocol

Constructor and Description
Protocol(Protocol copyMe) copy constructor

Uses of Protocol in org.molgenis.omx.observ.db

Classes in org.molgenis.omx.observ.db with type parameters of type Protocol

Modifier and Type	Class and Description
class	ProtocolSecurityDecorator<E extends Protocol> TODO add column level security filters

Methods in org.molgenis.omx.observ.db that return Protocol

Modifier and Type	Method and Description
Protocol	ProtocolJpaMapper.create()

Methods in org.molgenis.omx.observ.db that return types with arguments of type Protocol

Modifier and Type	Method and Description
List<Protocol>	ProtocolJpaMapper.createList(int size) Return EMPTY list of given allocated size

Methods in org.molgenis.omx.observ.db with parameters of type Protocol

Modifier and Type	Method and Description
void	ProtocolJpaMapper.create(Protocol entity) This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
void	ProtocolJpaMapper.destroy(Protocol protocol)
void	ProtocolJpaMapper.edit(Protocol protocol)

Method parameters in org.molgenis.omx.observ.db with type arguments of type Protocol

Modifier and Type	Method and Description
int	ProtocolJpaMapper.executeAdd(List<? extends Protocol> entities)
int	ProtocolJpaMapper.executeRemove(List<? extends Protocol> entities)
int	ProtocolJpaMapper.executeUpdate(List<? extends Protocol> entities)
void	ProtocolJpaMapper.prepareFileAttachements(List<Protocol> entities, File baseDir)
void	ProtocolJpaMapper.resolveForeignKeys(List<Protocol> entities)
boolean	ProtocolJpaMapper.saveFileAttachements(List<Protocol> entities, File baseDir)

Uses of Protocol in org.molgenis.omx.protocol

Constructors in org.molgenis.omx.protocol with parameters of type Protocol

Constructor and Description
ProtocolTable(Protocol protocol, Database db)

Uses of Protocol in org.molgenis.omx.utils

Methods in org.molgenis.omx.utils that return types with arguments of type Protocol

Modifier and Type	Method and Description
static List<Protocol>	ProtocolUtils.getProtocolDescendants(Protocol protocol) Returns the descendants of the given protocol including the given protocol
static List<Protocol>	ProtocolUtils.getProtocolDescendants(Protocol protocol, boolean includeProtocol) Returns the descendants of the given protocol

Methods in org.molgenis.omx.utils with parameters of type Protocol

Modifier and Type	Method and Description
static List<Protocol>	ProtocolUtils.getProtocolDescendants(Protocol protocol) Returns the descendants of the given protocol including the given protocol
static List<Protocol>	ProtocolUtils.getProtocolDescendants(Protocol protocol, boolean includeProtocol) Returns the descendants of the given protocol

Uses of Protocol in org.molgenis.service

Methods in org.molgenis.service that return Protocol

Modifier and Type	Method and Description
Protocol	ProtocolService.create(Protocol protocol)
Protocol	ProtocolService.read(Integer id)

Methods in org.molgenis.service that return types with arguments of type Protocol

Modifier and Type	Method and Description
Iterable<Protocol>	ProtocolService.readAll()
EntityPager<Protocol>	ProtocolService.readAll(int start, int num, List<QueryRule> queryRules)

Methods in org.molgenis.service with parameters of type Protocol

Modifier and Type	Method and Description
Protocol	ProtocolService.create(Protocol protocol)
void	ProtocolService.update(Protocol protocol)