org.molgenis.omx.observ.target

Class Individual

java.lang.Object

org.molgenis.util.AbstractEntity

org.molgenis.omx.observ.Characteristic

org.molgenis.omx.observ.ObservationTarget

org.molgenis.omx.observ.target.Individual

All Implemented Interfaces:

Serializable, Autoid, Identifiable, Entity

@Entity
public class Individual
extends ObservationTarget

Individual: The Individuals class defines the subjects that are used as observation target. The Individual class maps to XGAP:Individual and PaGE:Individual. Groups of individuals can be defined via Panel. .

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	FATHER
static String	FATHER_IDENTIFIER
static String	ID
static String	MOTHER
static String	MOTHER_IDENTIFIER

Fields inherited from class org.molgenis.omx.observ.Characteristic

__TYPE, DESCRIPTION, IDENTIFIER, NAME

Constructor Summary

Constructors

Constructor and Description
Individual()
Individual(Individual copyMe) copy constructor

Method Summary

Methods

Modifier and Type	Method and Description
Individual	create(Entity entity)
boolean	equals(Object obj)
static List<? extends Individual>	find(Database db, QueryRule... rules) Shorthand for db.find(Individual.class, org.molgenis.framework.db.QueryRule ...
static Individual	findById(Database db, Integer id)
static Individual	findByIdentifier(Database db, String identifier)
Object	get(String name) Generic getter.
Integer	getFather_Id()
String	getFather_Identifier() Get a pretty label Identifier for cross reference Father to Individual.Id.
Individual	getFather() Get the Refers to the father of the individual..
Individual	getFather(Database db) Deprecated.
Vector<String>	getFields()
Vector<String>	getFields(boolean skipAutoIds) Get the names of all public properties of Individual.
String	getFields(String sep) Deprecated.
String	getIdField()
Object	getIdValue()
Collection<Panel>	getIndividualsPanelCollection()
Collection<Panel>	getIndividualsPanelCollection(Database db)
List<String>	getLabelFields()
Integer	getMother_Id()
String	getMother_Identifier() Get a pretty label Identifier for cross reference Mother to Individual.Id.
Individual	getMother() Get the Refers to the mother of the individual..
Individual	getMother(Database db) Deprecated.
String	getValues(String sep) Deprecated.
String	getXrefIdFieldName(String fieldName)
int	hashCode()
static Query<? extends Individual>	query(Database db) Shorthand for db.query(Individual.class).
void	set(Entity entity, boolean strict)
void	setFather_Id(Integer father_id) Set foreign key for field father.
void	setFather_Identifier(String father_Identifier) Set a pretty label for cross reference Father to Individual.Id.
void	setFather(Individual father) Set the Refers to the father of the individual..
void	setFather(Integer father_id)
void	setIndividualsPanelCollection(Collection<Panel> collection)
void	setMother_Id(Integer mother_id) Set foreign key for field mother.
void	setMother_Identifier(String mother_Identifier) Set a pretty label for cross reference Mother to Individual.Id.
void	setMother(Individual mother) Set the Refers to the mother of the individual..
void	setMother(Integer mother_id)
String	toString()
String	toString(boolean verbose)
void	validate()

Methods inherited from class org.molgenis.omx.observ.Characteristic

get__Type, get__Type, get__TypeLabel, get__TypeOptions, getDescription, getDescription, getId, getIdentifier, getIdentifier, getName, getName, getValueMrefValueCollection, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollection

Methods inherited from class org.molgenis.util.AbstractEntity

getLabelValue, getValues, isObjectRepresentation, isReadonly, set, set, setReadonly, setValuesFromString, string2date

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.util.Entity

getLabelValue, getValues, isReadonly, set, set, setReadonly

Field Detail

MOTHER

public static final String MOTHER

See Also:

Constant Field Values

MOTHER_IDENTIFIER

public static final String MOTHER_IDENTIFIER

See Also:

Constant Field Values

FATHER

public static final String FATHER

See Also:

Constant Field Values

FATHER_IDENTIFIER

public static final String FATHER_IDENTIFIER

See Also:

Constant Field Values

ID

public static final String ID

See Also:

Constant Field Values

Constructor Detail

Individual

public Individual()

Individual

public Individual(Individual copyMe)
           throws Exception

copy constructor

Throws:

Exception

Method Detail

query

public static Query<? extends Individual> query(Database db)

Shorthand for db.query(Individual.class).

find

public static List<? extends Individual> find(Database db,
                              QueryRule... rules)
                                       throws DatabaseException

Shorthand for db.find(Individual.class, org.molgenis.framework.db.QueryRule ... rules).

Throws:

DatabaseException

findById

public static Individual findById(Database db,
                  Integer id)
                           throws DatabaseException

Throws:

DatabaseException

findByIdentifier

public static Individual findByIdentifier(Database db,
                          String identifier)
                                   throws DatabaseException

Throws:

DatabaseException

getMother

public Individual getMother()

Get the Refers to the mother of the individual..

Returns:

mother.

getMother

@Deprecated
public Individual getMother(Database db)

Deprecated.

setMother

public void setMother(Individual mother)

Set the Refers to the mother of the individual..

Parameters:

mother -

setMother_Id

public void setMother_Id(Integer mother_id)

Set foreign key for field mother. This will erase any foreign key objects currently set. FIXME: can we autoload the new object?

setMother

public void setMother(Integer mother_id)

getMother_Id

public Integer getMother_Id()

getMother_Identifier

public String getMother_Identifier()

Get a pretty label Identifier for cross reference Mother to Individual.Id.

setMother_Identifier

public void setMother_Identifier(String mother_Identifier)

Set a pretty label for cross reference Mother to Individual.Id. Implies setMother(null) until save

getFather

public Individual getFather()

Get the Refers to the father of the individual..

Returns:

father.

getFather

@Deprecated
public Individual getFather(Database db)

Deprecated.

setFather

public void setFather(Individual father)

Set the Refers to the father of the individual..

Parameters:

father -

setFather_Id

public void setFather_Id(Integer father_id)

Set foreign key for field father. This will erase any foreign key objects currently set. FIXME: can we autoload the new object?

setFather

public void setFather(Integer father_id)

getFather_Id

public Integer getFather_Id()

getFather_Identifier

public String getFather_Identifier()

Get a pretty label Identifier for cross reference Father to Individual.Id.

setFather_Identifier

public void setFather_Identifier(String father_Identifier)

Set a pretty label for cross reference Father to Individual.Id. Implies setFather(null) until save

get

public Object get(String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

Overrides:

get in class ObservationTarget

validate

public void validate()
              throws DatabaseException

Specified by:

validate in interface Entity

Overrides:

validate in class ObservationTarget

Throws:

DatabaseException

set

public void set(Entity entity,
       boolean strict)
         throws Exception

Specified by:

set in interface Entity

Overrides:

set in class ObservationTarget

Throws:

Exception

toString

public String toString()

Overrides:

toString in class ObservationTarget

toString

public String toString(boolean verbose)

Overrides:

toString in class ObservationTarget

getFields

public Vector<String> getFields(boolean skipAutoIds)

Get the names of all public properties of Individual.

Specified by:

getFields in interface Entity

Overrides:

getFields in class ObservationTarget

getFields

public Vector<String> getFields()

Specified by:

getFields in interface Entity

Overrides:

getFields in class ObservationTarget

getIdField

public String getIdField()

Specified by:

getIdField in interface Entity

Overrides:

getIdField in class ObservationTarget

getLabelFields

public List<String> getLabelFields()

Specified by:

getLabelFields in interface Entity

Overrides:

getLabelFields in class ObservationTarget

getFields

@Deprecated
public String getFields(String sep)

Deprecated.

Specified by:

getFields in interface Entity

Overrides:

getFields in class ObservationTarget

getIdValue

public Object getIdValue()

Specified by:

getIdValue in interface Entity

Overrides:

getIdValue in class ObservationTarget

getXrefIdFieldName

public String getXrefIdFieldName(String fieldName)

Specified by:

getXrefIdFieldName in interface Entity

Overrides:

getXrefIdFieldName in class ObservationTarget

getValues

@Deprecated
public String getValues(String sep)

Deprecated.

Specified by:

getValues in interface Entity

Overrides:

getValues in class ObservationTarget

create

public Individual create(Entity entity)
                  throws Exception

Specified by:

create in interface Entity

Overrides:

create in class ObservationTarget

Throws:

Exception

getIndividualsPanelCollection

public Collection<Panel> getIndividualsPanelCollection()

getIndividualsPanelCollection

public Collection<Panel> getIndividualsPanelCollection(Database db)

setIndividualsPanelCollection

public void setIndividualsPanelCollection(Collection<Panel> collection)

equals

public boolean equals(Object obj)

Overrides:

equals in class ObservationTarget

hashCode

public int hashCode()

Overrides:

hashCode in class ObservationTarget