org.molgenis.omx.observ.target

Class PanelSource

java.lang.Object

org.molgenis.util.AbstractEntity

org.molgenis.omx.observ.target.PanelSource

All Implemented Interfaces:

Serializable, Autoid, Entity

@Entity
public class PanelSource
extends AbstractEntity
implements Autoid

PanelSource: PanelSources is partOf Panel to define how panels are related panels, founder panels, such as overlap, selection criteria, getting assayed panel from a sample panel, etc. .

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	CURRENTPANEL
static String	CURRENTPANEL_IDENTIFIER
static String	ID
static String	NUMBEROFINDIVIDUALS
static String	SELECTIONCRITERIA
static String	SOURCEPANEL
static String	SOURCEPANEL_IDENTIFIER

Constructor Summary

Constructors

Constructor and Description
PanelSource()
PanelSource(PanelSource copyMe) copy constructor

Method Summary

Methods

Modifier and Type	Method and Description
PanelSource	create(Entity entity)
boolean	equals(Object obj)
static List<? extends PanelSource>	find(Database db, QueryRule... rules) Shorthand for db.find(PanelSource.class, org.molgenis.framework.db.QueryRule ...
static PanelSource	findById(Database db, Integer id)
Object	get(String name) Generic getter.
Integer	getCurrentPanel_Id()
String	getCurrentPanel_Identifier() Get a pretty label Identifier for cross reference CurrentPanel to Panel.Id.
Panel	getCurrentPanel() Get the Panel for which these sources are defined..
Panel	getCurrentPanel(Database db) Deprecated.
Vector<String>	getFields()
Vector<String>	getFields(boolean skipAutoIds) Get the names of all public properties of PanelSource.
String	getFields(String sep) Deprecated.
Integer	getId() Get the automatically generated internal id, only for internal use..
String	getIdField()
Object	getIdValue()
List<String>	getLabelFields()
Integer	getNumberOfIndividuals() Get the Number of individuals lifted over from this source.
Integer	getNumberOfIndividuals(Database db) Deprecated.
String	getSelectionCriteria() Get the Inclusion/exclusion criteria used to select these individuals from source into current panel.
String	getSelectionCriteria(Database db) Deprecated.
Integer	getSourcePanel_Id()
String	getSourcePanel_Identifier() Get a pretty label Identifier for cross reference SourcePanel to Panel.Id.
Panel	getSourcePanel() Get the Source that contributed individuals to current panel.
Panel	getSourcePanel(Database db) Deprecated.
String	getValues(String sep) Deprecated.
String	getXrefIdFieldName(String fieldName)
int	hashCode()
static Query<? extends PanelSource>	query(Database db) Shorthand for db.query(PanelSource.class).
void	set(Entity entity, boolean strict)
void	setCurrentPanel_Id(Integer currentPanel_id) Set foreign key for field currentPanel.
void	setCurrentPanel_Identifier(String currentPanel_Identifier) Set a pretty label for cross reference CurrentPanel to Panel.Id.
void	setCurrentPanel(Integer currentPanel_id)
void	setCurrentPanel(Panel currentPanel) Set the Panel for which these sources are defined..
void	setId(Integer id) Set the automatically generated internal id, only for internal use..
void	setNumberOfIndividuals(Integer numberOfIndividuals) Set the Number of individuals lifted over from this source.
void	setSelectionCriteria(String selectionCriteria) Set the Inclusion/exclusion criteria used to select these individuals from source into current panel.
void	setSourcePanel_Id(Integer sourcePanel_id) Set foreign key for field sourcePanel.
void	setSourcePanel_Identifier(String sourcePanel_Identifier) Set a pretty label for cross reference SourcePanel to Panel.Id.
void	setSourcePanel(Integer sourcePanel_id)
void	setSourcePanel(Panel sourcePanel) Set the Source that contributed individuals to current panel.
String	toString()
String	toString(boolean verbose)
void	validate()

Methods inherited from class org.molgenis.util.AbstractEntity

get__Type, get__TypeLabel, get__TypeOptions, getLabelValue, getValues, isObjectRepresentation, isReadonly, set__Type, set, set, setReadonly, setValuesFromString, string2date

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.util.Entity

getLabelValue, getValues, isReadonly, set, set, setReadonly

Field Detail

ID

public static final String ID

See Also:

Constant Field Values

CURRENTPANEL

public static final String CURRENTPANEL

See Also:

Constant Field Values

CURRENTPANEL_IDENTIFIER

public static final String CURRENTPANEL_IDENTIFIER

See Also:

Constant Field Values

SOURCEPANEL

public static final String SOURCEPANEL

See Also:

Constant Field Values

SOURCEPANEL_IDENTIFIER

public static final String SOURCEPANEL_IDENTIFIER

See Also:

Constant Field Values

NUMBEROFINDIVIDUALS

public static final String NUMBEROFINDIVIDUALS

See Also:

Constant Field Values

SELECTIONCRITERIA

public static final String SELECTIONCRITERIA

See Also:

Constant Field Values

Constructor Detail

PanelSource

public PanelSource()

PanelSource

public PanelSource(PanelSource copyMe)
            throws Exception

copy constructor

Throws:

Exception

Method Detail

query

public static Query<? extends PanelSource> query(Database db)

Shorthand for db.query(PanelSource.class).

find

public static List<? extends PanelSource> find(Database db,
                               QueryRule... rules)
                                        throws DatabaseException

Shorthand for db.find(PanelSource.class, org.molgenis.framework.db.QueryRule ... rules).

Throws:

DatabaseException

findById

public static PanelSource findById(Database db,
                   Integer id)
                            throws DatabaseException

Throws:

DatabaseException

getId

public Integer getId()

Get the automatically generated internal id, only for internal use..

Specified by:

getId in interface Autoid

Returns:

id.

setId

public void setId(Integer id)

Set the automatically generated internal id, only for internal use..

Specified by:

setId in interface Autoid

Parameters:

id -

getCurrentPanel

public Panel getCurrentPanel()

Get the Panel for which these sources are defined..

Returns:

currentPanel.

getCurrentPanel

@Deprecated
public Panel getCurrentPanel(Database db)

Deprecated.

setCurrentPanel

public void setCurrentPanel(Panel currentPanel)

Set the Panel for which these sources are defined..

Parameters:

currentPanel -

setCurrentPanel_Id

public void setCurrentPanel_Id(Integer currentPanel_id)

Set foreign key for field currentPanel. This will erase any foreign key objects currently set. FIXME: can we autoload the new object?

setCurrentPanel

public void setCurrentPanel(Integer currentPanel_id)

getCurrentPanel_Id

public Integer getCurrentPanel_Id()

getCurrentPanel_Identifier

public String getCurrentPanel_Identifier()

Get a pretty label Identifier for cross reference CurrentPanel to Panel.Id.

setCurrentPanel_Identifier

public void setCurrentPanel_Identifier(String currentPanel_Identifier)

Set a pretty label for cross reference CurrentPanel to Panel.Id. Implies setCurrentPanel(null) until save

getSourcePanel

public Panel getSourcePanel()

Get the Source that contributed individuals to current panel.

Returns:

sourcePanel.

getSourcePanel

@Deprecated
public Panel getSourcePanel(Database db)

Deprecated.

setSourcePanel

public void setSourcePanel(Panel sourcePanel)

Set the Source that contributed individuals to current panel.

Parameters:

sourcePanel -

setSourcePanel_Id

public void setSourcePanel_Id(Integer sourcePanel_id)

Set foreign key for field sourcePanel. This will erase any foreign key objects currently set. FIXME: can we autoload the new object?

setSourcePanel

public void setSourcePanel(Integer sourcePanel_id)

getSourcePanel_Id

public Integer getSourcePanel_Id()

getSourcePanel_Identifier

public String getSourcePanel_Identifier()

Get a pretty label Identifier for cross reference SourcePanel to Panel.Id.

setSourcePanel_Identifier

public void setSourcePanel_Identifier(String sourcePanel_Identifier)

Set a pretty label for cross reference SourcePanel to Panel.Id. Implies setSourcePanel(null) until save

getNumberOfIndividuals

public Integer getNumberOfIndividuals()

Get the Number of individuals lifted over from this source.

Returns:

numberOfIndividuals.

getNumberOfIndividuals

@Deprecated
public Integer getNumberOfIndividuals(Database db)

Deprecated.

setNumberOfIndividuals

public void setNumberOfIndividuals(Integer numberOfIndividuals)

Set the Number of individuals lifted over from this source.

Parameters:

numberOfIndividuals -

getSelectionCriteria

public String getSelectionCriteria()

Get the Inclusion/exclusion criteria used to select these individuals from source into current panel.

Returns:

selectionCriteria.

getSelectionCriteria

@Deprecated
public String getSelectionCriteria(Database db)

Deprecated.

setSelectionCriteria

public void setSelectionCriteria(String selectionCriteria)

Set the Inclusion/exclusion criteria used to select these individuals from source into current panel.

Parameters:

selectionCriteria -

get

public Object get(String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

validate

public void validate()
              throws DatabaseException

Specified by:

validate in interface Entity

Throws:

DatabaseException

set

public void set(Entity entity,
       boolean strict)
         throws Exception

Specified by:

set in interface Entity

Throws:

Exception

toString

public String toString()

Overrides:

toString in class Object

toString

public String toString(boolean verbose)

getFields

public Vector<String> getFields(boolean skipAutoIds)

Get the names of all public properties of PanelSource.

Specified by:

getFields in interface Entity

getFields

public Vector<String> getFields()

Specified by:

getFields in interface Entity

getIdField

public String getIdField()

Specified by:

getIdField in interface Entity

getLabelFields

public List<String> getLabelFields()

Specified by:

getLabelFields in interface Entity

getFields

@Deprecated
public String getFields(String sep)

Deprecated.

Specified by:

getFields in interface Entity

getIdValue

public Object getIdValue()

Specified by:

getIdValue in interface Entity

getXrefIdFieldName

public String getXrefIdFieldName(String fieldName)

Specified by:

getXrefIdFieldName in interface Entity

getValues

@Deprecated
public String getValues(String sep)

Deprecated.

Specified by:

getValues in interface Entity

Overrides:

getValues in class AbstractEntity

create

public PanelSource create(Entity entity)
                   throws Exception

Specified by:

create in interface Entity

Throws:

Exception

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object