Uses of Class
org.molgenis.omx.observ.target.Species

Packages that use Species

Package	Description
org.molgenis.omx.observ.target
org.molgenis.omx.observ.target.db
org.molgenis.service

Uses of Species in org.molgenis.omx.observ.target

Methods in org.molgenis.omx.observ.target that return Species

Modifier and Type	Method and Description
Species	Species.create(Entity entity)
static Species	Species.findById(Database db, Integer id)
static Species	Species.findByIdentifier(Database db, String identifier)
static Species	Species.findByOntologyTermAccession(Database db, Integer ontology, String termAccession)
Species	Panel.getSpecies() Get the The species this panel is an instance of/part of/extracted from..
Species	Panel.getSpecies(Database db) Deprecated.

Methods in org.molgenis.omx.observ.target that return types with arguments of type Species

Modifier and Type	Method and Description
static List<? extends Species>	Species.find(Database db, QueryRule... rules) Shorthand for db.find(Species.class, org.molgenis.framework.db.QueryRule ...
static Query<? extends Species>	Species.query(Database db) Shorthand for db.query(Species.class).

Methods in org.molgenis.omx.observ.target with parameters of type Species

Modifier and Type	Method and Description
void	Panel.setSpecies(Species species) Set the The species this panel is an instance of/part of/extracted from..

Constructors in org.molgenis.omx.observ.target with parameters of type Species

Constructor and Description
Species(Species copyMe) copy constructor

Uses of Species in org.molgenis.omx.observ.target.db

Classes in org.molgenis.omx.observ.target.db with type parameters of type Species

Modifier and Type	Class and Description
class	SpeciesSecurityDecorator<E extends Species> TODO add column level security filters

Methods in org.molgenis.omx.observ.target.db that return Species

Modifier and Type	Method and Description
Species	SpeciesJpaMapper.create()

Methods in org.molgenis.omx.observ.target.db that return types with arguments of type Species

Modifier and Type	Method and Description
List<Species>	SpeciesJpaMapper.createList(int size) Return EMPTY list of given allocated size

Methods in org.molgenis.omx.observ.target.db with parameters of type Species

Modifier and Type	Method and Description
void	SpeciesJpaMapper.create(Species entity) This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
void	SpeciesJpaMapper.destroy(Species species)
void	SpeciesJpaMapper.edit(Species species)

Method parameters in org.molgenis.omx.observ.target.db with type arguments of type Species

Modifier and Type	Method and Description
int	SpeciesJpaMapper.executeAdd(List<? extends Species> entities)
int	SpeciesJpaMapper.executeRemove(List<? extends Species> entities)
int	SpeciesJpaMapper.executeUpdate(List<? extends Species> entities)
void	SpeciesJpaMapper.prepareFileAttachements(List<Species> entities, File baseDir)
void	SpeciesJpaMapper.resolveForeignKeys(List<Species> entities)
boolean	SpeciesJpaMapper.saveFileAttachements(List<Species> entities, File baseDir)

Uses of Species in org.molgenis.service

Methods in org.molgenis.service that return Species

Modifier and Type	Method and Description
Species	SpeciesService.create(Species species)
Species	SpeciesService.read(Integer id)

Methods in org.molgenis.service that return types with arguments of type Species

Modifier and Type	Method and Description
Iterable<Species>	SpeciesService.readAll()
EntityPager<Species>	SpeciesService.readAll(int start, int num, List<QueryRule> queryRules)

Methods in org.molgenis.service with parameters of type Species

Modifier and Type	Method and Description
Species	SpeciesService.create(Species species)
void	SpeciesService.update(Species species)