org.molgenis.omx.observ.target

Class Panel

java.lang.Object

org.molgenis.data.support.AbstractEntity

org.molgenis.omx.observ.Characteristic

org.molgenis.omx.observ.ObservationTarget

org.molgenis.omx.observ.target.Panel

All Implemented Interfaces:

java.io.Serializable, Entity, Autoid, Identifiable

@Entity
public class Panel
extends ObservationTarget
implements Entity

Panel: The Panel class defines groups of individuals based on cohort design, case/controls, families, etc. For instance: 'LifeLines cohort', 'middle aged man', 'recombinant mouse inbred Line dba x b6' or 'Smith family'. A Panel can act as a single ObservationTarget. For example: average height (Measurement) in the LifeLines cohort (Panel) is 174cm (ObservedValue). The Panel class maps to XGAP:Strain and PaGE:Panel classes. In METABASE this is assumed there is one panel per study. .

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	ENTITY_NAME
static java.lang.String	ID
static java.lang.String	INDIVIDUALS
static java.lang.String	NUMBEROFINDIVIDUALS
static java.lang.String	PANELTYPE
static java.lang.String	SPECIES

Fields inherited from class org.molgenis.omx.observ.Characteristic

__TYPE, DESCRIPTION, IDENTIFIER, NAME

Constructor Summary

Constructors

Constructor and Description
Panel()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(java.lang.Object obj)
java.lang.Object	get(java.lang.String name) Generic getter.
java.lang.Iterable<java.lang.String>	getAttributeNames()
EntityMetaData	getEntityMetaData()
java.lang.String	getEntityName()
java.lang.Integer	getIdValue()
java.util.List<Individual>	getIndividuals() Get the The list of individuals in this panel.
java.util.List<java.lang.String>	getLabelAttributeNames()
java.lang.Integer	getNumberOfIndividuals() Get the .
OntologyTerm	getPanelType() Get the Indicate the type of Panel (example: Sample panel, AssayedPanel, Natural=wild type, Parental=parents of a cross, F1=First generation of cross, RCC=Recombinant congenic, CSS=chromosome substitution).
Species	getSpecies() Get the The species this panel is an instance of/part of/extracted from..
int	hashCode()
void	set(Entity entity, boolean strict)
void	set(java.lang.String attributeName, java.lang.Object value)
void	setIndividuals(java.util.List<Individual> individuals) Set the The list of individuals in this panel.
void	setNumberOfIndividuals(java.lang.Integer numberOfIndividuals) Set the .
void	setPanelType(OntologyTerm panelType) Set the Indicate the type of Panel (example: Sample panel, AssayedPanel, Natural=wild type, Parental=parents of a cross, F1=First generation of cross, RCC=Recombinant congenic, CSS=chromosome substitution).
void	setSpecies(Species species) Set the The species this panel is an instance of/part of/extracted from..
java.lang.String	toString()
java.lang.String	toString(boolean verbose)

Methods inherited from class org.molgenis.omx.observ.Characteristic

get__Type, get__TypeLabel, get__TypeOptions, getDescription, getId, getIdentifier, getName, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollection

Methods inherited from class org.molgenis.data.support.AbstractEntity

getBoolean, getDate, getDouble, getEntities, getEntities, getEntity, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, isObjectRepresentation, set, setValuesFromString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.data.Entity

getBoolean, getDate, getDouble, getEntities, getEntities, getEntity, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, set

Field Detail

ENTITY_NAME

public static final java.lang.String ENTITY_NAME

See Also:

Constant Field Values

PANELTYPE

public static final java.lang.String PANELTYPE

See Also:

Constant Field Values

NUMBEROFINDIVIDUALS

public static final java.lang.String NUMBEROFINDIVIDUALS

See Also:

Constant Field Values

SPECIES

public static final java.lang.String SPECIES

See Also:

Constant Field Values

INDIVIDUALS

public static final java.lang.String INDIVIDUALS

See Also:

Constant Field Values

ID

public static final java.lang.String ID

See Also:

Constant Field Values

Constructor Detail

Panel

public Panel()

Method Detail

getEntityName

public java.lang.String getEntityName()

Overrides:

getEntityName in class ObservationTarget

getPanelType

public OntologyTerm getPanelType()

Get the Indicate the type of Panel (example: Sample panel, AssayedPanel, Natural=wild type, Parental=parents of a cross, F1=First generation of cross, RCC=Recombinant congenic, CSS=chromosome substitution).

Returns:

panelType.

setPanelType

public void setPanelType(OntologyTerm panelType)

Set the Indicate the type of Panel (example: Sample panel, AssayedPanel, Natural=wild type, Parental=parents of a cross, F1=First generation of cross, RCC=Recombinant congenic, CSS=chromosome substitution).

Parameters:

panelType -

getNumberOfIndividuals

public java.lang.Integer getNumberOfIndividuals()

Get the .

Returns:

numberOfIndividuals.

setNumberOfIndividuals

public void setNumberOfIndividuals(java.lang.Integer numberOfIndividuals)

Set the .

Parameters:

numberOfIndividuals -

getSpecies

public Species getSpecies()

Get the The species this panel is an instance of/part of/extracted from..

Returns:

species.

setSpecies

public void setSpecies(Species species)

Set the The species this panel is an instance of/part of/extracted from..

Parameters:

species -

getIndividuals

public java.util.List<Individual> getIndividuals()

Get the The list of individuals in this panel.

Returns:

individuals.

setIndividuals

public void setIndividuals(java.util.List<Individual> individuals)

Set the The list of individuals in this panel.

Parameters:

individuals -

get

public java.lang.Object get(java.lang.String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

Overrides:

get in class ObservationTarget

set

public void set(Entity entity,
       boolean strict)

Specified by:

set in interface Entity

Overrides:

set in class ObservationTarget

toString

public java.lang.String toString()

Overrides:

toString in class ObservationTarget

toString

public java.lang.String toString(boolean verbose)

Overrides:

toString in class ObservationTarget

getIdValue

public java.lang.Integer getIdValue()

Specified by:

getIdValue in interface Entity

Overrides:

getIdValue in class ObservationTarget

getAttributeNames

public java.lang.Iterable<java.lang.String> getAttributeNames()

Specified by:

getAttributeNames in interface Entity

Overrides:

getAttributeNames in class ObservationTarget

getLabelAttributeNames

public java.util.List<java.lang.String> getLabelAttributeNames()

Specified by:

getLabelAttributeNames in interface Entity

Overrides:

getLabelAttributeNames in class ObservationTarget

set

public void set(java.lang.String attributeName,
       java.lang.Object value)

Specified by:

set in interface Entity

Overrides:

set in class ObservationTarget

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class ObservationTarget

hashCode

public int hashCode()

Overrides:

hashCode in class ObservationTarget

getEntityMetaData

public EntityMetaData getEntityMetaData()

Specified by:

getEntityMetaData in interface Entity

Overrides:

getEntityMetaData in class ObservationTarget