org.molgenis.omx.observ.target

Class Species

java.lang.Object

org.molgenis.data.support.AbstractEntity

org.molgenis.omx.observ.Characteristic

org.molgenis.omx.observ.target.OntologyTerm

org.molgenis.omx.observ.target.Species

All Implemented Interfaces:

java.io.Serializable, Entity, Autoid, Identifiable

@Entity
public class Species
extends OntologyTerm
implements Entity

Species: Ontology terms for species. E.g. Arabidopsis thaliana. DISCUSSION: should we avoid subclasses of OntologyTerm and instead make a 'tag' filter on terms so we can make pulldowns context dependent (e.g. to only show particular subqueries of ontologies). .

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	ENTITY_NAME
static java.lang.String	ID

Fields inherited from class org.molgenis.omx.observ.target.OntologyTerm

DEFINITION, ONTOLOGY, TERMACCESSION

Fields inherited from class org.molgenis.omx.observ.Characteristic

__TYPE, DESCRIPTION, IDENTIFIER, NAME

Constructor Summary

Constructors

Constructor and Description
Species()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(java.lang.Object obj)
java.lang.Object	get(java.lang.String name) Generic getter.
java.lang.Iterable<java.lang.String>	getAttributeNames()
EntityMetaData	getEntityMetaData()
java.lang.String	getEntityName()
java.lang.Integer	getIdValue()
java.util.List<java.lang.String>	getLabelAttributeNames()
int	hashCode()
void	set(Entity entity, boolean strict)
void	set(java.lang.String attributeName, java.lang.Object value)
java.lang.String	toString()
java.lang.String	toString(boolean verbose)

Methods inherited from class org.molgenis.omx.observ.target.OntologyTerm

getDefinition, getDefinitionsObservableFeatureCollection, getOntology, getTermAccession, setDefinition, setDefinitionsObservableFeatureCollection, setOntology, setTermAccession

Methods inherited from class org.molgenis.omx.observ.Characteristic

get__Type, get__TypeLabel, get__TypeOptions, getDescription, getId, getIdentifier, getName, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollection

Methods inherited from class org.molgenis.data.support.AbstractEntity

getBoolean, getDate, getDouble, getEntities, getEntities, getEntity, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, isObjectRepresentation, set, setValuesFromString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.data.Entity

getBoolean, getDate, getDouble, getEntities, getEntities, getEntity, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, set

Field Detail

ENTITY_NAME

public static final java.lang.String ENTITY_NAME

See Also:

Constant Field Values

ID

public static final java.lang.String ID

See Also:

Constant Field Values

Constructor Detail

Species

public Species()

Method Detail

getEntityName

public java.lang.String getEntityName()

Overrides:

getEntityName in class OntologyTerm

get

public java.lang.Object get(java.lang.String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

Overrides:

get in class OntologyTerm

set

public void set(Entity entity,
       boolean strict)

Specified by:

set in interface Entity

Overrides:

set in class OntologyTerm

toString

public java.lang.String toString()

Overrides:

toString in class OntologyTerm

toString

public java.lang.String toString(boolean verbose)

Overrides:

toString in class OntologyTerm

getIdValue

public java.lang.Integer getIdValue()

Specified by:

getIdValue in interface Entity

Overrides:

getIdValue in class OntologyTerm

getAttributeNames

public java.lang.Iterable<java.lang.String> getAttributeNames()

Specified by:

getAttributeNames in interface Entity

Overrides:

getAttributeNames in class OntologyTerm

getLabelAttributeNames

public java.util.List<java.lang.String> getLabelAttributeNames()

Specified by:

getLabelAttributeNames in interface Entity

Overrides:

getLabelAttributeNames in class OntologyTerm

set

public void set(java.lang.String attributeName,
       java.lang.Object value)

Specified by:

set in interface Entity

Overrides:

set in class OntologyTerm

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class OntologyTerm

hashCode

public int hashCode()

Overrides:

hashCode in class OntologyTerm

getEntityMetaData

public EntityMetaData getEntityMetaData()

Specified by:

getEntityMetaData in interface Entity

Overrides:

getEntityMetaData in class OntologyTerm