| Package | Description |
|---|---|
| org.molgenis.omx.das | |
| org.molgenis.omx.patient | |
| org.molgenis.omx.patient.db | |
| org.molgenis.service |
| Modifier and Type | Method and Description |
|---|---|
protected Patient |
DasOmxDataSource.findPatient(String patient) |
| Modifier and Type | Method and Description |
|---|---|
protected List<Variant> |
DasOmxDataSource.queryVariants(String segmentId,
int start,
int stop,
Patient patientObject) |
| Modifier and Type | Method and Description |
|---|---|
Patient |
Patient.create(Entity entity) |
static Patient |
Patient.findById(Database db,
Integer id) |
static Patient |
Patient.findByIdentifier(Database db,
String identifier) |
| Modifier and Type | Method and Description |
|---|---|
static List<? extends Patient> |
Patient.find(Database db,
QueryRule... rules)
Shorthand for db.find(Patient.class, org.molgenis.framework.db.QueryRule ...
|
static Query<? extends Patient> |
Patient.query(Database db)
Shorthand for db.query(Patient.class).
|
| Constructor and Description |
|---|
Patient(Patient copyMe)
copy constructor
|
| Modifier and Type | Class and Description |
|---|---|
class |
PatientSecurityDecorator<E extends Patient>
TODO add column level security filters
|
| Modifier and Type | Method and Description |
|---|---|
Patient |
PatientJpaMapper.create() |
| Modifier and Type | Method and Description |
|---|---|
List<Patient> |
PatientJpaMapper.createList(int size)
Return EMPTY list of given allocated size
|
| Modifier and Type | Method and Description |
|---|---|
void |
PatientJpaMapper.create(Patient entity)
This method first saves the objects that are being refered to by entity,
then the entity itself and
finally the objects that refer to this object
|
void |
PatientJpaMapper.destroy(Patient patient) |
void |
PatientJpaMapper.edit(Patient patient) |
| Modifier and Type | Method and Description |
|---|---|
int |
PatientJpaMapper.executeAdd(List<? extends Patient> entities) |
int |
PatientJpaMapper.executeRemove(List<? extends Patient> entities) |
int |
PatientJpaMapper.executeUpdate(List<? extends Patient> entities) |
void |
PatientJpaMapper.prepareFileAttachements(List<Patient> entities,
File baseDir) |
void |
PatientJpaMapper.resolveForeignKeys(List<Patient> entities) |
boolean |
PatientJpaMapper.saveFileAttachements(List<Patient> entities,
File baseDir) |
| Modifier and Type | Method and Description |
|---|---|
Patient |
PatientService.create(Patient patient) |
Patient |
PatientService.read(Integer id) |
| Modifier and Type | Method and Description |
|---|---|
Iterable<Patient> |
PatientService.readAll() |
EntityPager<Patient> |
PatientService.readAll(int start,
int num,
List<QueryRule> queryRules) |
| Modifier and Type | Method and Description |
|---|---|
Patient |
PatientService.create(Patient patient) |
void |
PatientService.update(Patient patient) |
Copyright © 2013. All Rights Reserved.