org.molgenis.omx.xgap

Class MassPeak

java.lang.Object

org.molgenis.util.AbstractEntity

org.molgenis.omx.observ.Characteristic

org.molgenis.omx.observ.ObservationTarget

org.molgenis.omx.xgap.MassPeak

All Implemented Interfaces:

Serializable, Autoid, Identifiable, Entity

@Entity
public class MassPeak
extends ObservationTarget

MassPeak: A peak that has been selected within a mass spectrometry experiment..

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	ID
static String	MZ
static String	RETENTIONTIME

Fields inherited from class org.molgenis.omx.observ.Characteristic

__TYPE, DESCRIPTION, IDENTIFIER, NAME

Constructor Summary

Constructors

Constructor and Description
MassPeak()
MassPeak(MassPeak copyMe) copy constructor

Method Summary

Methods

Modifier and Type	Method and Description
MassPeak	create(Entity entity)
boolean	equals(Object obj)
static List<? extends MassPeak>	find(Database db, QueryRule... rules) Shorthand for db.find(MassPeak.class, org.molgenis.framework.db.QueryRule ...
static MassPeak	findById(Database db, Integer id)
static MassPeak	findByIdentifier(Database db, String identifier)
Object	get(String name) Generic getter.
Vector<String>	getFields()
Vector<String>	getFields(boolean skipAutoIds) Get the names of all public properties of MassPeak.
String	getFields(String sep) Deprecated.
String	getIdField()
Object	getIdValue()
List<String>	getLabelFields()
Double	getMZ() Get the Mass over charge ratio of this peak..
Double	getMZ(Database db) Deprecated.
Double	getRetentionTime() Get the The retention-time of this peak in minutes..
Double	getRetentionTime(Database db) Deprecated.
String	getValues(String sep) Deprecated.
String	getXrefIdFieldName(String fieldName)
int	hashCode()
static Query<? extends MassPeak>	query(Database db) Shorthand for db.query(MassPeak.class).
void	set(Entity entity, boolean strict)
void	setMZ(Double mZ) Set the Mass over charge ratio of this peak..
void	setRetentionTime(Double retentionTime) Set the The retention-time of this peak in minutes..
String	toString()
String	toString(boolean verbose)
void	validate()

Methods inherited from class org.molgenis.omx.observ.Characteristic

get__Type, get__Type, get__TypeLabel, get__TypeOptions, getDescription, getDescription, getId, getIdentifier, getIdentifier, getName, getName, getValueMrefValueCollection, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollection

Methods inherited from class org.molgenis.util.AbstractEntity

getLabelValue, getValues, isObjectRepresentation, isReadonly, set, set, setReadonly, setValuesFromString, string2date

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.util.Entity

getLabelValue, getValues, isReadonly, set, set, setReadonly

Field Detail

MZ

public static final String MZ

See Also:

Constant Field Values

RETENTIONTIME

public static final String RETENTIONTIME

See Also:

Constant Field Values

ID

public static final String ID

See Also:

Constant Field Values

Constructor Detail

MassPeak

public MassPeak()

MassPeak

public MassPeak(MassPeak copyMe)
         throws Exception

copy constructor

Throws:

Exception

Method Detail

query

public static Query<? extends MassPeak> query(Database db)

Shorthand for db.query(MassPeak.class).

find

public static List<? extends MassPeak> find(Database db,
                            QueryRule... rules)
                                     throws DatabaseException

Shorthand for db.find(MassPeak.class, org.molgenis.framework.db.QueryRule ... rules).

Throws:

DatabaseException

findById

public static MassPeak findById(Database db,
                Integer id)
                         throws DatabaseException

Throws:

DatabaseException

findByIdentifier

public static MassPeak findByIdentifier(Database db,
                        String identifier)
                                 throws DatabaseException

Throws:

DatabaseException

getMZ

public Double getMZ()

Get the Mass over charge ratio of this peak..

Returns:

mZ.

getMZ

@Deprecated
public Double getMZ(Database db)

Deprecated.

setMZ

public void setMZ(Double mZ)

Set the Mass over charge ratio of this peak..

Parameters:

mZ -

getRetentionTime

public Double getRetentionTime()

Get the The retention-time of this peak in minutes..

Returns:

retentionTime.

getRetentionTime

@Deprecated
public Double getRetentionTime(Database db)

Deprecated.

setRetentionTime

public void setRetentionTime(Double retentionTime)

Set the The retention-time of this peak in minutes..

Parameters:

retentionTime -

get

public Object get(String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

Overrides:

get in class ObservationTarget

validate

public void validate()
              throws DatabaseException

Specified by:

validate in interface Entity

Overrides:

validate in class ObservationTarget

Throws:

DatabaseException

set

public void set(Entity entity,
       boolean strict)
         throws Exception

Specified by:

set in interface Entity

Overrides:

set in class ObservationTarget

Throws:

Exception

toString

public String toString()

Overrides:

toString in class ObservationTarget

toString

public String toString(boolean verbose)

Overrides:

toString in class ObservationTarget

getFields

public Vector<String> getFields(boolean skipAutoIds)

Get the names of all public properties of MassPeak.

Specified by:

getFields in interface Entity

Overrides:

getFields in class ObservationTarget

getFields

public Vector<String> getFields()

Specified by:

getFields in interface Entity

Overrides:

getFields in class ObservationTarget

getIdField

public String getIdField()

Specified by:

getIdField in interface Entity

Overrides:

getIdField in class ObservationTarget

getLabelFields

public List<String> getLabelFields()

Specified by:

getLabelFields in interface Entity

Overrides:

getLabelFields in class ObservationTarget

getFields

@Deprecated
public String getFields(String sep)

Deprecated.

Specified by:

getFields in interface Entity

Overrides:

getFields in class ObservationTarget

getIdValue

public Object getIdValue()

Specified by:

getIdValue in interface Entity

Overrides:

getIdValue in class ObservationTarget

getXrefIdFieldName

public String getXrefIdFieldName(String fieldName)

Specified by:

getXrefIdFieldName in interface Entity

Overrides:

getXrefIdFieldName in class ObservationTarget

getValues

@Deprecated
public String getValues(String sep)

Deprecated.

Specified by:

getValues in interface Entity

Overrides:

getValues in class ObservationTarget

create

public MassPeak create(Entity entity)
                throws Exception

Specified by:

create in interface Entity

Overrides:

create in class ObservationTarget

Throws:

Exception

equals

public boolean equals(Object obj)

Overrides:

equals in class ObservationTarget

hashCode

public int hashCode()

Overrides:

hashCode in class ObservationTarget