org.molgenis.omx.xgap

Class Transcript

java.lang.Object

org.molgenis.util.AbstractEntity

org.molgenis.omx.observ.Characteristic

org.molgenis.omx.observ.ObservationTarget

org.molgenis.omx.xgap.Transcript

All Implemented Interfaces:

Serializable, Autoid, Identifiable, Entity

@Entity
public class Transcript
extends ObservationTarget

Transcript: Trait annotations specific for transcripts. .

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	GENE
static String	GENE_IDENTIFIER
static String	ID

Fields inherited from class org.molgenis.omx.observ.Characteristic

__TYPE, DESCRIPTION, IDENTIFIER, NAME

Constructor Summary

Constructors

Constructor and Description
Transcript()
Transcript(Transcript copyMe) copy constructor

Method Summary

Methods

Modifier and Type	Method and Description
Transcript	create(Entity entity)
boolean	equals(Object obj)
static List<? extends Transcript>	find(Database db, QueryRule... rules) Shorthand for db.find(Transcript.class, org.molgenis.framework.db.QueryRule ...
static Transcript	findById(Database db, Integer id)
static Transcript	findByIdentifier(Database db, String identifier)
Object	get(String name) Generic getter.
Vector<String>	getFields()
Vector<String>	getFields(boolean skipAutoIds) Get the names of all public properties of Transcript.
String	getFields(String sep) Deprecated.
Integer	getGene_Id()
String	getGene_Identifier() Get a pretty label Identifier for cross reference Gene to Gene.Id.
Gene	getGene() Get the The gene that produces this protein.
Gene	getGene(Database db) Deprecated.
String	getIdField()
Object	getIdValue()
List<String>	getLabelFields()
String	getValues(String sep) Deprecated.
String	getXrefIdFieldName(String fieldName)
int	hashCode()
static Query<? extends Transcript>	query(Database db) Shorthand for db.query(Transcript.class).
void	set(Entity entity, boolean strict)
void	setGene_Id(Integer gene_id) Set foreign key for field gene.
void	setGene_Identifier(String gene_Identifier) Set a pretty label for cross reference Gene to Gene.Id.
void	setGene(Gene gene) Set the The gene that produces this protein.
void	setGene(Integer gene_id)
String	toString()
String	toString(boolean verbose)
void	validate()

Methods inherited from class org.molgenis.omx.observ.Characteristic

get__Type, get__Type, get__TypeLabel, get__TypeOptions, getDescription, getDescription, getId, getIdentifier, getIdentifier, getName, getName, getValueMrefValueCollection, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollection

Methods inherited from class org.molgenis.util.AbstractEntity

getLabelValue, getValues, isObjectRepresentation, isReadonly, set, set, setReadonly, setValuesFromString, string2date

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.util.Entity

getLabelValue, getValues, isReadonly, set, set, setReadonly

Field Detail

GENE

public static final String GENE

See Also:

Constant Field Values

GENE_IDENTIFIER

public static final String GENE_IDENTIFIER

See Also:

Constant Field Values

ID

public static final String ID

See Also:

Constant Field Values

Constructor Detail

Transcript

public Transcript()

Transcript

public Transcript(Transcript copyMe)
           throws Exception

copy constructor

Throws:

Exception

Method Detail

query

public static Query<? extends Transcript> query(Database db)

Shorthand for db.query(Transcript.class).

find

public static List<? extends Transcript> find(Database db,
                              QueryRule... rules)
                                       throws DatabaseException

Shorthand for db.find(Transcript.class, org.molgenis.framework.db.QueryRule ... rules).

Throws:

DatabaseException

findById

public static Transcript findById(Database db,
                  Integer id)
                           throws DatabaseException

Throws:

DatabaseException

findByIdentifier

public static Transcript findByIdentifier(Database db,
                          String identifier)
                                   throws DatabaseException

Throws:

DatabaseException

getGene

public Gene getGene()

Get the The gene that produces this protein.

Returns:

gene.

getGene

@Deprecated
public Gene getGene(Database db)

Deprecated.

setGene

public void setGene(Gene gene)

Set the The gene that produces this protein.

Parameters:

gene -

setGene_Id

public void setGene_Id(Integer gene_id)

Set foreign key for field gene. This will erase any foreign key objects currently set. FIXME: can we autoload the new object?

setGene

public void setGene(Integer gene_id)

getGene_Id

public Integer getGene_Id()

getGene_Identifier

public String getGene_Identifier()

Get a pretty label Identifier for cross reference Gene to Gene.Id.

setGene_Identifier

public void setGene_Identifier(String gene_Identifier)

Set a pretty label for cross reference Gene to Gene.Id. Implies setGene(null) until save

get

public Object get(String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

Overrides:

get in class ObservationTarget

validate

public void validate()
              throws DatabaseException

Specified by:

validate in interface Entity

Overrides:

validate in class ObservationTarget

Throws:

DatabaseException

set

public void set(Entity entity,
       boolean strict)
         throws Exception

Specified by:

set in interface Entity

Overrides:

set in class ObservationTarget

Throws:

Exception

toString

public String toString()

Overrides:

toString in class ObservationTarget

toString

public String toString(boolean verbose)

Overrides:

toString in class ObservationTarget

getFields

public Vector<String> getFields(boolean skipAutoIds)

Get the names of all public properties of Transcript.

Specified by:

getFields in interface Entity

Overrides:

getFields in class ObservationTarget

getFields

public Vector<String> getFields()

Specified by:

getFields in interface Entity

Overrides:

getFields in class ObservationTarget

getIdField

public String getIdField()

Specified by:

getIdField in interface Entity

Overrides:

getIdField in class ObservationTarget

getLabelFields

public List<String> getLabelFields()

Specified by:

getLabelFields in interface Entity

Overrides:

getLabelFields in class ObservationTarget

getFields

@Deprecated
public String getFields(String sep)

Deprecated.

Specified by:

getFields in interface Entity

Overrides:

getFields in class ObservationTarget

getIdValue

public Object getIdValue()

Specified by:

getIdValue in interface Entity

Overrides:

getIdValue in class ObservationTarget

getXrefIdFieldName

public String getXrefIdFieldName(String fieldName)

Specified by:

getXrefIdFieldName in interface Entity

Overrides:

getXrefIdFieldName in class ObservationTarget

getValues

@Deprecated
public String getValues(String sep)

Deprecated.

Specified by:

getValues in interface Entity

Overrides:

getValues in class ObservationTarget

create

public Transcript create(Entity entity)
                  throws Exception

Specified by:

create in interface Entity

Overrides:

create in class ObservationTarget

Throws:

Exception

equals

public boolean equals(Object obj)

Overrides:

equals in class ObservationTarget

hashCode

public int hashCode()

Overrides:

hashCode in class ObservationTarget