Uses of Class
org.molgenis.omx.xgap.Chromosome

Packages that use Chromosome

Package	Description
org.molgenis.omx.das
org.molgenis.omx.xgap
org.molgenis.omx.xgap.db
org.molgenis.service

Uses of Chromosome in org.molgenis.omx.das

Methods in org.molgenis.omx.das that return Chromosome

Modifier and Type	Method and Description
protected Chromosome	DasOmxDataSource.getChromosome(String segmentId)

Uses of Chromosome in org.molgenis.omx.xgap

Methods in org.molgenis.omx.xgap that return Chromosome

Modifier and Type	Method and Description
Chromosome	Chromosome.create(Entity entity)
static Chromosome	Chromosome.findById(Database db, Integer id)
static Chromosome	Chromosome.findByIdentifier(Database db, String identifier)
Chromosome	ProbeSet.getChromosome() Get the Reference to the chromosome this position belongs to..
Chromosome	Locus.getChromosome()
Chromosome	Variant.getChromosome() Get the Reference to the chromosome this position belongs to..
Chromosome	Gene.getChromosome() Get the Reference to the chromosome this position belongs to..
Chromosome	Probe.getChromosome() Get the Reference to the chromosome this position belongs to..
Chromosome	Clone.getChromosome() Get the Reference to the chromosome this position belongs to..
Chromosome	Marker.getChromosome() Get the Reference to the chromosome this position belongs to..
Chromosome	ProbeSet.getChromosome(Database db) Deprecated.
Chromosome	Variant.getChromosome(Database db) Deprecated.
Chromosome	Gene.getChromosome(Database db) Deprecated.
Chromosome	Probe.getChromosome(Database db) Deprecated.
Chromosome	Clone.getChromosome(Database db) Deprecated.
Chromosome	Marker.getChromosome(Database db) Deprecated.

Methods in org.molgenis.omx.xgap that return types with arguments of type Chromosome

Modifier and Type	Method and Description
static List<? extends Chromosome>	Chromosome.find(Database db, QueryRule... rules) Shorthand for db.find(Chromosome.class, org.molgenis.framework.db.QueryRule ...
static Query<? extends Chromosome>	Chromosome.query(Database db) Shorthand for db.query(Chromosome.class).

Methods in org.molgenis.omx.xgap with parameters of type Chromosome

Modifier and Type	Method and Description
void	ProbeSet.setChromosome(Chromosome chromosome) Set the Reference to the chromosome this position belongs to..
void	Locus.setChromosome(Chromosome chromosome)
void	Variant.setChromosome(Chromosome chromosome) Set the Reference to the chromosome this position belongs to..
void	Gene.setChromosome(Chromosome chromosome) Set the Reference to the chromosome this position belongs to..
void	Probe.setChromosome(Chromosome chromosome) Set the Reference to the chromosome this position belongs to..
void	Clone.setChromosome(Chromosome chromosome) Set the Reference to the chromosome this position belongs to..
void	Marker.setChromosome(Chromosome chromosome) Set the Reference to the chromosome this position belongs to..

Constructors in org.molgenis.omx.xgap with parameters of type Chromosome

Constructor and Description
Chromosome(Chromosome copyMe) copy constructor

Uses of Chromosome in org.molgenis.omx.xgap.db

Classes in org.molgenis.omx.xgap.db with type parameters of type Chromosome

Modifier and Type	Class and Description
class	ChromosomeSecurityDecorator<E extends Chromosome> TODO add column level security filters

Methods in org.molgenis.omx.xgap.db that return Chromosome

Modifier and Type	Method and Description
Chromosome	ChromosomeJpaMapper.create()

Methods in org.molgenis.omx.xgap.db that return types with arguments of type Chromosome

Modifier and Type	Method and Description
List<Chromosome>	ChromosomeJpaMapper.createList(int size) Return EMPTY list of given allocated size

Methods in org.molgenis.omx.xgap.db with parameters of type Chromosome

Modifier and Type	Method and Description
void	ChromosomeJpaMapper.create(Chromosome entity) This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
void	ChromosomeJpaMapper.destroy(Chromosome chromosome)
void	ChromosomeJpaMapper.edit(Chromosome chromosome)

Method parameters in org.molgenis.omx.xgap.db with type arguments of type Chromosome

Modifier and Type	Method and Description
int	ChromosomeJpaMapper.executeAdd(List<? extends Chromosome> entities)
int	ChromosomeJpaMapper.executeRemove(List<? extends Chromosome> entities)
int	ChromosomeJpaMapper.executeUpdate(List<? extends Chromosome> entities)
void	ChromosomeJpaMapper.prepareFileAttachements(List<Chromosome> entities, File baseDir)
void	ChromosomeJpaMapper.resolveForeignKeys(List<Chromosome> entities)
boolean	ChromosomeJpaMapper.saveFileAttachements(List<Chromosome> entities, File baseDir)

Uses of Chromosome in org.molgenis.service

Methods in org.molgenis.service that return Chromosome

Modifier and Type	Method and Description
Chromosome	ChromosomeService.create(Chromosome chromosome)
Chromosome	ChromosomeService.read(Integer id)

Methods in org.molgenis.service that return types with arguments of type Chromosome

Modifier and Type	Method and Description
Iterable<Chromosome>	ChromosomeService.readAll()
EntityPager<Chromosome>	ChromosomeService.readAll(int start, int num, List<QueryRule> queryRules)

Methods in org.molgenis.service with parameters of type Chromosome

Modifier and Type	Method and Description
Chromosome	ChromosomeService.create(Chromosome chromosome)
void	ChromosomeService.update(Chromosome chromosome)