Uses of Class
org.molgenis.omx.xgap.Gene

Packages that use Gene

Package	Description
org.molgenis.omx.xgap
org.molgenis.omx.xgap.db
org.molgenis.service

Uses of Gene in org.molgenis.omx.xgap

Methods in org.molgenis.omx.xgap that return Gene

Modifier and Type	Method and Description
Gene	Gene.create(Entity entity)
static Gene	Gene.findById(Database db, Integer id)
static Gene	Gene.findByIdentifier(Database db, String identifier)
Gene	Protein.getGene() Get the The gene that produces this protein.
Gene	Transcript.getGene() Get the The gene that produces this protein.
Gene	Protein.getGene(Database db) Deprecated.
Gene	Transcript.getGene(Database db) Deprecated.
Gene	Probe.getReportsFor() Get the The gene this probe reports for..
Gene	Probe.getReportsFor(Database db) Deprecated.

Methods in org.molgenis.omx.xgap that return types with arguments of type Gene

Modifier and Type	Method and Description
static List<? extends Gene>	Gene.find(Database db, QueryRule... rules) Shorthand for db.find(Gene.class, org.molgenis.framework.db.QueryRule ...
static Query<? extends Gene>	Gene.query(Database db) Shorthand for db.query(Gene.class).

Methods in org.molgenis.omx.xgap with parameters of type Gene

Modifier and Type	Method and Description
void	Protein.setGene(Gene gene) Set the The gene that produces this protein.
void	Transcript.setGene(Gene gene) Set the The gene that produces this protein.
void	Probe.setReportsFor(Gene reportsFor) Set the The gene this probe reports for..

Constructors in org.molgenis.omx.xgap with parameters of type Gene

Constructor and Description
Gene(Gene copyMe) copy constructor

Uses of Gene in org.molgenis.omx.xgap.db

Classes in org.molgenis.omx.xgap.db with type parameters of type Gene

Modifier and Type	Class and Description
class	GeneSecurityDecorator<E extends Gene> TODO add column level security filters

Methods in org.molgenis.omx.xgap.db that return Gene

Modifier and Type	Method and Description
Gene	GeneJpaMapper.create()

Methods in org.molgenis.omx.xgap.db that return types with arguments of type Gene

Modifier and Type	Method and Description
List<Gene>	GeneJpaMapper.createList(int size) Return EMPTY list of given allocated size

Methods in org.molgenis.omx.xgap.db with parameters of type Gene

Modifier and Type	Method and Description
void	GeneJpaMapper.create(Gene entity) This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
void	GeneJpaMapper.destroy(Gene gene)
void	GeneJpaMapper.edit(Gene gene)

Method parameters in org.molgenis.omx.xgap.db with type arguments of type Gene

Modifier and Type	Method and Description
int	GeneJpaMapper.executeAdd(List<? extends Gene> entities)
int	GeneJpaMapper.executeRemove(List<? extends Gene> entities)
int	GeneJpaMapper.executeUpdate(List<? extends Gene> entities)
void	GeneJpaMapper.prepareFileAttachements(List<Gene> entities, File baseDir)
void	GeneJpaMapper.resolveForeignKeys(List<Gene> entities)
boolean	GeneJpaMapper.saveFileAttachements(List<Gene> entities, File baseDir)

Uses of Gene in org.molgenis.service

Methods in org.molgenis.service that return Gene

Modifier and Type	Method and Description
Gene	GeneService.create(Gene gene)
Gene	GeneService.read(Integer id)

Methods in org.molgenis.service that return types with arguments of type Gene

Modifier and Type	Method and Description
Iterable<Gene>	GeneService.readAll()
EntityPager<Gene>	GeneService.readAll(int start, int num, List<QueryRule> queryRules)

Methods in org.molgenis.service with parameters of type Gene

Modifier and Type	Method and Description
Gene	GeneService.create(Gene gene)
void	GeneService.update(Gene gene)