| Package | Description |
|---|---|
| org.molgenis.omx.xgap | |
| org.molgenis.omx.xgap.db | |
| org.molgenis.service |
| Modifier and Type | Method and Description |
|---|---|
Gene |
Gene.create(Entity entity) |
static Gene |
Gene.findById(Database db,
Integer id) |
static Gene |
Gene.findByIdentifier(Database db,
String identifier) |
Gene |
Protein.getGene()
Get the The gene that produces this protein.
|
Gene |
Transcript.getGene()
Get the The gene that produces this protein.
|
Gene |
Protein.getGene(Database db)
Deprecated.
|
Gene |
Transcript.getGene(Database db)
Deprecated.
|
Gene |
Probe.getReportsFor()
Get the The gene this probe reports for..
|
Gene |
Probe.getReportsFor(Database db)
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
static List<? extends Gene> |
Gene.find(Database db,
QueryRule... rules)
Shorthand for db.find(Gene.class, org.molgenis.framework.db.QueryRule ...
|
static Query<? extends Gene> |
Gene.query(Database db)
Shorthand for db.query(Gene.class).
|
| Modifier and Type | Method and Description |
|---|---|
void |
Protein.setGene(Gene gene)
Set the The gene that produces this protein.
|
void |
Transcript.setGene(Gene gene)
Set the The gene that produces this protein.
|
void |
Probe.setReportsFor(Gene reportsFor)
Set the The gene this probe reports for..
|
| Constructor and Description |
|---|
Gene(Gene copyMe)
copy constructor
|
| Modifier and Type | Class and Description |
|---|---|
class |
GeneSecurityDecorator<E extends Gene>
TODO add column level security filters
|
| Modifier and Type | Method and Description |
|---|---|
Gene |
GeneJpaMapper.create() |
| Modifier and Type | Method and Description |
|---|---|
List<Gene> |
GeneJpaMapper.createList(int size)
Return EMPTY list of given allocated size
|
| Modifier and Type | Method and Description |
|---|---|
void |
GeneJpaMapper.create(Gene entity)
This method first saves the objects that are being refered to by entity,
then the entity itself and
finally the objects that refer to this object
|
void |
GeneJpaMapper.destroy(Gene gene) |
void |
GeneJpaMapper.edit(Gene gene) |
| Modifier and Type | Method and Description |
|---|---|
int |
GeneJpaMapper.executeAdd(List<? extends Gene> entities) |
int |
GeneJpaMapper.executeRemove(List<? extends Gene> entities) |
int |
GeneJpaMapper.executeUpdate(List<? extends Gene> entities) |
void |
GeneJpaMapper.prepareFileAttachements(List<Gene> entities,
File baseDir) |
void |
GeneJpaMapper.resolveForeignKeys(List<Gene> entities) |
boolean |
GeneJpaMapper.saveFileAttachements(List<Gene> entities,
File baseDir) |
| Modifier and Type | Method and Description |
|---|---|
Gene |
GeneService.create(Gene gene) |
Gene |
GeneService.read(Integer id) |
| Modifier and Type | Method and Description |
|---|---|
Iterable<Gene> |
GeneService.readAll() |
EntityPager<Gene> |
GeneService.readAll(int start,
int num,
List<QueryRule> queryRules) |
| Modifier and Type | Method and Description |
|---|---|
Gene |
GeneService.create(Gene gene) |
void |
GeneService.update(Gene gene) |
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