Uses of Class
org.molgenis.omx.xgap.Marker

Packages that use Marker

Package	Description
org.molgenis.omx.xgap
org.molgenis.omx.xgap.db
org.molgenis.service

Uses of Marker in org.molgenis.omx.xgap

Subclasses of Marker in org.molgenis.omx.xgap

Modifier and Type	Class and Description
class	SNP SNP: A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases.

Methods in org.molgenis.omx.xgap that return Marker

Modifier and Type	Method and Description
Marker	Marker.create(Entity entity)
static Marker	Marker.findById(Database db, Integer id)
static Marker	Marker.findByIdentifier(Database db, String identifier)
Marker	Marker_ReportsFor.getMarker() Get the .
Marker	Marker_ReportsFor.getMarker(Database db) Deprecated.
Marker	Marker_ReportsFor.getReportsFor() Get the .
Marker	Marker_ReportsFor.getReportsFor(Database db) Deprecated.

Methods in org.molgenis.omx.xgap that return types with arguments of type Marker

Modifier and Type	Method and Description
static List<? extends Marker>	Marker.find(Database db, QueryRule... rules) Shorthand for db.find(Marker.class, org.molgenis.framework.db.QueryRule ...
List<Marker>	Marker.getReportsFor() Get the The marker (or a subclass like 'SNP') this marker (or a subclass like 'SNP') reports for..
List<Marker>	Marker.getReportsFor(Database db) Deprecated.
Collection<Marker>	Marker.getReportsForMarkerCollection()
Collection<Marker>	Marker.getReportsForMarkerCollection(Database db)
static Query<? extends Marker>	Marker.query(Database db) Shorthand for db.query(Marker.class).

Methods in org.molgenis.omx.xgap with parameters of type Marker

Modifier and Type	Method and Description
void	Marker_ReportsFor.setMarker(Marker marker) Set the .
void	Marker.setReportsFor(Marker... reportsFor)
void	Marker_ReportsFor.setReportsFor(Marker reportsFor) Set the .

Method parameters in org.molgenis.omx.xgap with type arguments of type Marker

Modifier and Type	Method and Description
void	Marker.setReportsFor(List<Marker> reportsFor) Set the The marker (or a subclass like 'SNP') this marker (or a subclass like 'SNP') reports for..
void	Marker.setReportsForMarkerCollection(Collection<Marker> collection)

Constructors in org.molgenis.omx.xgap with parameters of type Marker

Constructor and Description
Marker(Marker copyMe) copy constructor

Uses of Marker in org.molgenis.omx.xgap.db

Classes in org.molgenis.omx.xgap.db with type parameters of type Marker

Modifier and Type	Class and Description
class	MarkerSecurityDecorator<E extends Marker> TODO add column level security filters

Methods in org.molgenis.omx.xgap.db that return Marker

Modifier and Type	Method and Description
Marker	MarkerJpaMapper.create()

Methods in org.molgenis.omx.xgap.db that return types with arguments of type Marker

Modifier and Type	Method and Description
List<Marker>	MarkerJpaMapper.createList(int size) Return EMPTY list of given allocated size

Methods in org.molgenis.omx.xgap.db with parameters of type Marker

Modifier and Type	Method and Description
void	MarkerJpaMapper.create(Marker entity) This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
void	MarkerJpaMapper.destroy(Marker marker)
void	MarkerJpaMapper.edit(Marker marker)

Method parameters in org.molgenis.omx.xgap.db with type arguments of type Marker

Modifier and Type	Method and Description
int	MarkerJpaMapper.executeAdd(List<? extends Marker> entities)
int	MarkerJpaMapper.executeRemove(List<? extends Marker> entities)
int	MarkerJpaMapper.executeUpdate(List<? extends Marker> entities)
void	MarkerJpaMapper.prepareFileAttachements(List<Marker> entities, File baseDir)
void	MarkerJpaMapper.resolveForeignKeys(List<Marker> entities)
boolean	MarkerJpaMapper.saveFileAttachements(List<Marker> entities, File baseDir)

Uses of Marker in org.molgenis.service

Methods in org.molgenis.service that return Marker

Modifier and Type	Method and Description
Marker	MarkerService.create(Marker marker)
Marker	MarkerService.read(Integer id)

Methods in org.molgenis.service that return types with arguments of type Marker

Modifier and Type	Method and Description
Iterable<Marker>	MarkerService.readAll()
EntityPager<Marker>	MarkerService.readAll(int start, int num, List<QueryRule> queryRules)

Methods in org.molgenis.service with parameters of type Marker

Modifier and Type	Method and Description
Marker	MarkerService.create(Marker marker)
void	MarkerService.update(Marker marker)