| Package | Description |
|---|---|
| org.molgenis.omx.xgap | |
| org.molgenis.omx.xgap.db | |
| org.molgenis.service |
| Modifier and Type | Method and Description |
|---|---|
Protein |
Protein.create(Entity entity) |
static Protein |
Protein.findById(Database db,
Integer id) |
static Protein |
Protein.findByIdentifier(Database db,
String identifier) |
| Modifier and Type | Method and Description |
|---|---|
static List<? extends Protein> |
Protein.find(Database db,
QueryRule... rules)
Shorthand for db.find(Protein.class, org.molgenis.framework.db.QueryRule ...
|
static Query<? extends Protein> |
Protein.query(Database db)
Shorthand for db.query(Protein.class).
|
| Constructor and Description |
|---|
Protein(Protein copyMe)
copy constructor
|
| Modifier and Type | Class and Description |
|---|---|
class |
ProteinSecurityDecorator<E extends Protein>
TODO add column level security filters
|
| Modifier and Type | Method and Description |
|---|---|
Protein |
ProteinJpaMapper.create() |
| Modifier and Type | Method and Description |
|---|---|
List<Protein> |
ProteinJpaMapper.createList(int size)
Return EMPTY list of given allocated size
|
| Modifier and Type | Method and Description |
|---|---|
void |
ProteinJpaMapper.create(Protein entity)
This method first saves the objects that are being refered to by entity,
then the entity itself and
finally the objects that refer to this object
|
void |
ProteinJpaMapper.destroy(Protein protein) |
void |
ProteinJpaMapper.edit(Protein protein) |
| Modifier and Type | Method and Description |
|---|---|
int |
ProteinJpaMapper.executeAdd(List<? extends Protein> entities) |
int |
ProteinJpaMapper.executeRemove(List<? extends Protein> entities) |
int |
ProteinJpaMapper.executeUpdate(List<? extends Protein> entities) |
void |
ProteinJpaMapper.prepareFileAttachements(List<Protein> entities,
File baseDir) |
void |
ProteinJpaMapper.resolveForeignKeys(List<Protein> entities) |
boolean |
ProteinJpaMapper.saveFileAttachements(List<Protein> entities,
File baseDir) |
| Modifier and Type | Method and Description |
|---|---|
Protein |
ProteinService.create(Protein protein) |
Protein |
ProteinService.read(Integer id) |
| Modifier and Type | Method and Description |
|---|---|
Iterable<Protein> |
ProteinService.readAll() |
EntityPager<Protein> |
ProteinService.readAll(int start,
int num,
List<QueryRule> queryRules) |
| Modifier and Type | Method and Description |
|---|---|
Protein |
ProteinService.create(Protein protein) |
void |
ProteinService.update(Protein protein) |
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