Uses of Class
org.molgenis.omx.xgap.Transcript

Packages that use Transcript

Package	Description
org.molgenis.omx.xgap
org.molgenis.omx.xgap.db
org.molgenis.service

Uses of Transcript in org.molgenis.omx.xgap

Methods in org.molgenis.omx.xgap that return Transcript

Modifier and Type	Method and Description
Transcript	Transcript.create(Entity entity)
static Transcript	Transcript.findById(Database db, Integer id)
static Transcript	Transcript.findByIdentifier(Database db, String identifier)
Transcript	Protein.getTranscript() Get the The transcript variant that produces this protein.
Transcript	Protein.getTranscript(Database db) Deprecated.

Methods in org.molgenis.omx.xgap that return types with arguments of type Transcript

Modifier and Type	Method and Description
static List<? extends Transcript>	Transcript.find(Database db, QueryRule... rules) Shorthand for db.find(Transcript.class, org.molgenis.framework.db.QueryRule ...
static Query<? extends Transcript>	Transcript.query(Database db) Shorthand for db.query(Transcript.class).

Methods in org.molgenis.omx.xgap with parameters of type Transcript

Modifier and Type	Method and Description
void	Protein.setTranscript(Transcript transcript) Set the The transcript variant that produces this protein.

Constructors in org.molgenis.omx.xgap with parameters of type Transcript

Constructor and Description
Transcript(Transcript copyMe) copy constructor

Uses of Transcript in org.molgenis.omx.xgap.db

Classes in org.molgenis.omx.xgap.db with type parameters of type Transcript

Modifier and Type	Class and Description
class	TranscriptSecurityDecorator<E extends Transcript> TODO add column level security filters

Methods in org.molgenis.omx.xgap.db that return Transcript

Modifier and Type	Method and Description
Transcript	TranscriptJpaMapper.create()

Methods in org.molgenis.omx.xgap.db that return types with arguments of type Transcript

Modifier and Type	Method and Description
List<Transcript>	TranscriptJpaMapper.createList(int size) Return EMPTY list of given allocated size

Methods in org.molgenis.omx.xgap.db with parameters of type Transcript

Modifier and Type	Method and Description
void	TranscriptJpaMapper.create(Transcript entity) This method first saves the objects that are being refered to by entity, then the entity itself and finally the objects that refer to this object
void	TranscriptJpaMapper.destroy(Transcript transcript)
void	TranscriptJpaMapper.edit(Transcript transcript)

Method parameters in org.molgenis.omx.xgap.db with type arguments of type Transcript

Modifier and Type	Method and Description
int	TranscriptJpaMapper.executeAdd(List<? extends Transcript> entities)
int	TranscriptJpaMapper.executeRemove(List<? extends Transcript> entities)
int	TranscriptJpaMapper.executeUpdate(List<? extends Transcript> entities)
void	TranscriptJpaMapper.prepareFileAttachements(List<Transcript> entities, File baseDir)
void	TranscriptJpaMapper.resolveForeignKeys(List<Transcript> entities)
boolean	TranscriptJpaMapper.saveFileAttachements(List<Transcript> entities, File baseDir)

Uses of Transcript in org.molgenis.service

Methods in org.molgenis.service that return Transcript

Modifier and Type	Method and Description
Transcript	TranscriptService.create(Transcript transcript)
Transcript	TranscriptService.read(Integer id)

Methods in org.molgenis.service that return types with arguments of type Transcript

Modifier and Type	Method and Description
Iterable<Transcript>	TranscriptService.readAll()
EntityPager<Transcript>	TranscriptService.readAll(int start, int num, List<QueryRule> queryRules)

Methods in org.molgenis.service with parameters of type Transcript

Modifier and Type	Method and Description
Transcript	TranscriptService.create(Transcript transcript)
void	TranscriptService.update(Transcript transcript)