Package org.molgenis.omx.xgap

Interface Summary

Interface	Description
Locus	Locus: position.

Class Summary

Class	Description
Chromosome	Chromosome: .
Clone	Clone: BAC clone fragment..
DerivedTrait	DerivedTrait: Any meta trait, eg.
EnvironmentalFactor	EnvironmentalFactor: Experimental conditions, such as temperature differences, batch effects etc..
Gene	Gene: Trait annotations specific for genes..
Marker	Marker: Trait annotations specific for markers..
Marker_ReportsFor	Marker_ReportsFor: Link table for many-to-many relationship 'Marker.ReportsFor'..
MassPeak	MassPeak: A peak that has been selected within a mass spectrometry experiment..
Metabolite	Metabolite: Trait annotations specific for metabolites.
NMRBin	NMRBin: Shift of the NMR frequency due to the chemical environment..
PairedSample	PairedSample: A pair of samples labeled for a two-color microarray experiment..
Polymorphism	Polymorphism: The difference of a single base discovered between two sequenced individuals..
Probe	Probe: A piece of sequence that reports for the expression of a gene, typically spotted onto a microarray..
ProbeSet	ProbeSet: A set of Probes.
Protein	Protein: Trait annotations specific for proteins..
Sample	Sample: .
SNP	SNP: A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases.
SNP_Polymorphism	SNP_Polymorphism: Link table for many-to-many relationship 'SNP.Polymorphism'..
Spot	Spot: This is the spot on a microarray.
Track	Track: .
Transcript	Transcript: Trait annotations specific for transcripts.
Variant	Variant: A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases.