Uses of Package
org.molgenis.omx.xgap

Packages that use org.molgenis.omx.xgap

Package	Description
org.molgenis.omx.das
org.molgenis.omx.patient
org.molgenis.omx.xgap
org.molgenis.omx.xgap.db
org.molgenis.service

Classes in org.molgenis.omx.xgap used by org.molgenis.omx.das

Class and Description
Chromosome Chromosome: .
Variant Variant: A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases.

Classes in org.molgenis.omx.xgap used by org.molgenis.omx.patient

Class and Description
Variant Variant: A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases.

Classes in org.molgenis.omx.xgap used by org.molgenis.omx.xgap

Class and Description
Chromosome Chromosome: .
Clone Clone: BAC clone fragment..
DerivedTrait DerivedTrait: Any meta trait, eg.
EnvironmentalFactor EnvironmentalFactor: Experimental conditions, such as temperature differences, batch effects etc..
Gene Gene: Trait annotations specific for genes..
Locus Locus: position.
Marker Marker: Trait annotations specific for markers..
Marker_ReportsFor Marker_ReportsFor: Link table for many-to-many relationship 'Marker.ReportsFor'..
MassPeak MassPeak: A peak that has been selected within a mass spectrometry experiment..
Metabolite Metabolite: Trait annotations specific for metabolites.
NMRBin NMRBin: Shift of the NMR frequency due to the chemical environment..
PairedSample PairedSample: A pair of samples labeled for a two-color microarray experiment..
Polymorphism Polymorphism: The difference of a single base discovered between two sequenced individuals..
Probe Probe: A piece of sequence that reports for the expression of a gene, typically spotted onto a microarray..
ProbeSet ProbeSet: A set of Probes.
Protein Protein: Trait annotations specific for proteins..
Sample Sample: .
SNP SNP: A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases.
SNP_Polymorphism SNP_Polymorphism: Link table for many-to-many relationship 'SNP.Polymorphism'..
Spot Spot: This is the spot on a microarray.
Track Track: .
Transcript Transcript: Trait annotations specific for transcripts.
Variant Variant: A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases.

Classes in org.molgenis.omx.xgap used by org.molgenis.omx.xgap.db

Class and Description
Chromosome Chromosome: .
Clone Clone: BAC clone fragment..
DerivedTrait DerivedTrait: Any meta trait, eg.
EnvironmentalFactor EnvironmentalFactor: Experimental conditions, such as temperature differences, batch effects etc..
Gene Gene: Trait annotations specific for genes..
Marker Marker: Trait annotations specific for markers..
Marker_ReportsFor Marker_ReportsFor: Link table for many-to-many relationship 'Marker.ReportsFor'..
MassPeak MassPeak: A peak that has been selected within a mass spectrometry experiment..
Metabolite Metabolite: Trait annotations specific for metabolites.
NMRBin NMRBin: Shift of the NMR frequency due to the chemical environment..
PairedSample PairedSample: A pair of samples labeled for a two-color microarray experiment..
Polymorphism Polymorphism: The difference of a single base discovered between two sequenced individuals..
Probe Probe: A piece of sequence that reports for the expression of a gene, typically spotted onto a microarray..
ProbeSet ProbeSet: A set of Probes.
Protein Protein: Trait annotations specific for proteins..
Sample Sample: .
SNP SNP: A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases.
SNP_Polymorphism SNP_Polymorphism: Link table for many-to-many relationship 'SNP.Polymorphism'..
Spot Spot: This is the spot on a microarray.
Track Track: .
Transcript Transcript: Trait annotations specific for transcripts.
Variant Variant: A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases.

Classes in org.molgenis.omx.xgap used by org.molgenis.service

Class and Description
Chromosome Chromosome: .
Clone Clone: BAC clone fragment..
DerivedTrait DerivedTrait: Any meta trait, eg.
EnvironmentalFactor EnvironmentalFactor: Experimental conditions, such as temperature differences, batch effects etc..
Gene Gene: Trait annotations specific for genes..
Marker Marker: Trait annotations specific for markers..
MassPeak MassPeak: A peak that has been selected within a mass spectrometry experiment..
Metabolite Metabolite: Trait annotations specific for metabolites.
NMRBin NMRBin: Shift of the NMR frequency due to the chemical environment..
PairedSample PairedSample: A pair of samples labeled for a two-color microarray experiment..
Polymorphism Polymorphism: The difference of a single base discovered between two sequenced individuals..
Probe Probe: A piece of sequence that reports for the expression of a gene, typically spotted onto a microarray..
ProbeSet ProbeSet: A set of Probes.
Protein Protein: Trait annotations specific for proteins..
Sample Sample: .
SNP SNP: A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases.
Spot Spot: This is the spot on a microarray.
Track Track: .
Transcript Transcript: Trait annotations specific for transcripts.
Variant Variant: A SNP is a special kind of Marker, but can also be seen as a phenotype to map against in some cases.