Serialized Form (molgenis-omx-das 0.0.4 API)

Package org.molgenis.omx.das
- Class org.molgenis.omx.das.MolgenisDasTarget extends uk.ac.ebi.mydas.model.DasTarget implements Serializable
  
  serialVersionUID:
  
  1L
Package org.molgenis.omx.patient
- Class org.molgenis.omx.patient.Patient extends Individual implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - allele1
```
Variant allele1
```
    - allele1_id
```
Integer allele1_id
```
    - allele1_Identifier
```
String allele1_Identifier
```
    - allele2
```
Variant allele2
```
    - allele2_id
```
Integer allele2_id
```
    - allele2_Identifier
```
String allele2_Identifier
```
    - pheno
```
String pheno
```
    - pubMedID
```
String pubMedID
```
    - reference
```
String reference
```
Package org.molgenis.omx.xgap
- Class org.molgenis.omx.xgap.Chromosome extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - orderNr
```
Integer orderNr
```
    - isAutosomal
```
Boolean isAutosomal
```
    - bpLength
```
Integer bpLength
```
    - species
```
OntologyTerm species
```
    - species_id
```
Integer species_id
```
    - species_Identifier
```
String species_Identifier
```
- Class org.molgenis.omx.xgap.Clone extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - chromosome
```
Chromosome chromosome
```
    - chromosome_id
```
Integer chromosome_id
```
    - chromosome_Identifier
```
String chromosome_Identifier
```
    - cM
```
Double cM
```
    - bpStart
```
Long bpStart
```
    - bpEnd
```
Long bpEnd
```
    - seq
```
String seq
```
    - symbol
```
String symbol
```
- Class org.molgenis.omx.xgap.DerivedTrait extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.omx.xgap.EnvironmentalFactor extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.omx.xgap.Gene extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - chromosome
```
Chromosome chromosome
```
    - chromosome_id
```
Integer chromosome_id
```
    - chromosome_Identifier
```
String chromosome_Identifier
```
    - cM
```
Double cM
```
    - bpStart
```
Long bpStart
```
    - bpEnd
```
Long bpEnd
```
    - seq
```
String seq
```
    - symbol
```
String symbol
```
    - orientation
```
String orientation
```
    - orientation_label
```
String orientation_label
```
    - control
```
Boolean control
```
- Class org.molgenis.omx.xgap.Marker extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - chromosome
```
Chromosome chromosome
```
    - chromosome_id
```
Integer chromosome_id
```
    - chromosome_Identifier
```
String chromosome_Identifier
```
    - cM
```
Double cM
```
    - bpStart
```
Long bpStart
```
    - bpEnd
```
Long bpEnd
```
    - seq
```
String seq
```
    - symbol
```
String symbol
```
    - reportsFor
```
List<E> reportsFor
```
    - reportsFor_id
```
List<E> reportsFor_id
```
    - reportsFor_Identifier
```
List<E> reportsFor_Identifier
```
    - reportsForMarkerCollection
```
Collection<E> reportsForMarkerCollection
```
- Class org.molgenis.omx.xgap.Marker_ReportsFor extends AbstractEntity implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - autoid
```
Integer autoid
```
    - reportsFor
```
Marker reportsFor
```
    - reportsFor_id
```
Integer reportsFor_id
```
    - reportsFor_Identifier
```
String reportsFor_Identifier
```
    - marker
```
Marker marker
```
    - marker_id
```
Integer marker_id
```
    - marker_Identifier
```
String marker_Identifier
```
- Class org.molgenis.omx.xgap.MassPeak extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - mZ
```
Double mZ
```
    - retentionTime
```
Double retentionTime
```
- Class org.molgenis.omx.xgap.Metabolite extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - formula
```
String formula
```
    - mass
```
Double mass
```
    - structure
```
String structure
```
- Class org.molgenis.omx.xgap.NMRBin extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.omx.xgap.PairedSample extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - subject1
```
Individual subject1
```
    - subject1_id
```
Integer subject1_id
```
    - subject1_Identifier
```
String subject1_Identifier
```
    - label1
```
OntologyTerm label1
```
    - label1_id
```
Integer label1_id
```
    - label1_Identifier
```
String label1_Identifier
```
    - subject2
```
Individual subject2
```
    - subject2_id
```
Integer subject2_id
```
    - subject2_Identifier
```
String subject2_Identifier
```
    - label2
```
OntologyTerm label2
```
    - label2_id
```
Integer label2_id
```
    - label2_Identifier
```
String label2_Identifier
```
- Class org.molgenis.omx.xgap.Polymorphism extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - base
```
String base
```
    - base_label
```
String base_label
```
    - value
```
String value
```
    - polymorphismSNPCollection
```
Collection<E> polymorphismSNPCollection
```
- Class org.molgenis.omx.xgap.Probe extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - chromosome
```
Chromosome chromosome
```
    - chromosome_id
```
Integer chromosome_id
```
    - chromosome_Identifier
```
String chromosome_Identifier
```
    - cM
```
Double cM
```
    - bpStart
```
Long bpStart
```
    - bpEnd
```
Long bpEnd
```
    - seq
```
String seq
```
    - symbol
```
String symbol
```
    - mismatch
```
Boolean mismatch
```
    - probeSet
```
ProbeSet probeSet
```
    - probeSet_id
```
Integer probeSet_id
```
    - probeSet_Identifier
```
String probeSet_Identifier
```
    - reportsFor
```
Gene reportsFor
```
    - reportsFor_id
```
Integer reportsFor_id
```
    - reportsFor_Identifier
```
String reportsFor_Identifier
```
- Class org.molgenis.omx.xgap.ProbeSet extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - chromosome
```
Chromosome chromosome
```
    - chromosome_id
```
Integer chromosome_id
```
    - chromosome_Identifier
```
String chromosome_Identifier
```
    - cM
```
Double cM
```
    - bpStart
```
Long bpStart
```
    - bpEnd
```
Long bpEnd
```
    - seq
```
String seq
```
    - symbol
```
String symbol
```
- Class org.molgenis.omx.xgap.Protein extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - gene
```
Gene gene
```
    - gene_id
```
Integer gene_id
```
    - gene_Identifier
```
String gene_Identifier
```
    - transcript
```
Transcript transcript
```
    - transcript_id
```
Integer transcript_id
```
    - transcript_Identifier
```
String transcript_Identifier
```
    - aminoSequence
```
String aminoSequence
```
    - mass
```
Double mass
```
- Class org.molgenis.omx.xgap.Sample extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - individual
```
Individual individual
```
    - individual_id
```
Integer individual_id
```
    - individual_Identifier
```
String individual_Identifier
```
    - tissue
```
OntologyTerm tissue
```
    - tissue_id
```
Integer tissue_id
```
    - tissue_Identifier
```
String tissue_Identifier
```
- Class org.molgenis.omx.xgap.SNP extends Marker implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - status
```
String status
```
    - polymorphism
```
List<E> polymorphism
```
    - polymorphism_id
```
List<E> polymorphism_id
```
    - polymorphism_Identifier
```
List<E> polymorphism_Identifier
```
- Class org.molgenis.omx.xgap.SNP_Polymorphism extends AbstractEntity implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - autoid
```
Integer autoid
```
    - polymorphism
```
Polymorphism polymorphism
```
    - polymorphism_id
```
Integer polymorphism_id
```
    - polymorphism_Identifier
```
String polymorphism_Identifier
```
    - sNP
```
SNP sNP
```
    - sNP_id
```
Integer sNP_id
```
    - sNP_Identifier
```
String sNP_Identifier
```
- Class org.molgenis.omx.xgap.Spot extends Probe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - x
```
Integer x
```
    - y
```
Integer y
```
    - gridX
```
Integer gridX
```
    - gridY
```
Integer gridY
```
- Class org.molgenis.omx.xgap.Track extends Characteristic implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.molgenis.omx.xgap.Transcript extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - gene
```
Gene gene
```
    - gene_id
```
Integer gene_id
```
    - gene_Identifier
```
String gene_Identifier
```
- Class org.molgenis.omx.xgap.Variant extends ObservationTarget implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - chromosome
```
Chromosome chromosome
```
    - chromosome_id
```
Integer chromosome_id
```
    - chromosome_Identifier
```
String chromosome_Identifier
```
    - cM
```
Double cM
```
    - bpStart
```
Long bpStart
```
    - bpEnd
```
Long bpEnd
```
    - seq
```
String seq
```
    - symbol
```
String symbol
```
    - mutationPosition
```
Integer mutationPosition
```
    - cdnaPosition
```
Integer cdnaPosition
```
    - aaPosition
```
Integer aaPosition
```
    - variantLength
```
Integer variantLength
```
    - event
```
String event
```
    - description
```
String description
```
    - ntChange
```
String ntChange
```
    - codonchange
```
String codonchange
```
    - cdnaNotation
```
String cdnaNotation
```
    - gdnaNotation
```
String gdnaNotation
```
    - aaNotation
```
String aaNotation
```
    - exon
```
String exon
```
    - consequence
```
String consequence
```
    - inheritance
```
String inheritance
```
    - reportedSNP
```
Boolean reportedSNP
```
    - effectOnSplicing
```
Boolean effectOnSplicing
```
    - pathogenicity
```
String pathogenicity
```
    - gene
```
String gene
```
    - idMutation
```
Integer idMutation
```
    - detailsForMutation
```
String detailsForMutation
```
    - track
```
Track track
```
    - track_id
```
Integer track_id
```
    - track_Identifier
```
String track_Identifier
```

Serialized Form

Package org.molgenis.omx.das

Class org.molgenis.omx.das.MolgenisDasTarget extends uk.ac.ebi.mydas.model.DasTarget implements Serializable

Package org.molgenis.omx.patient

Class org.molgenis.omx.patient.Patient extends Individual implements Serializable

Serialized Fields

allele1

allele1_id

allele1_Identifier

allele2

allele2_id

allele2_Identifier

pheno

pubMedID

reference

Package org.molgenis.omx.xgap

Class org.molgenis.omx.xgap.Chromosome extends ObservationTarget implements Serializable

Serialized Fields

orderNr

isAutosomal

bpLength

species

species_id

species_Identifier

Class org.molgenis.omx.xgap.Clone extends ObservationTarget implements Serializable

Serialized Fields

chromosome

chromosome_id

chromosome_Identifier

cM

bpStart

bpEnd

seq

symbol

Class org.molgenis.omx.xgap.DerivedTrait extends ObservationTarget implements Serializable

Class org.molgenis.omx.xgap.EnvironmentalFactor extends ObservationTarget implements Serializable

Class org.molgenis.omx.xgap.Gene extends ObservationTarget implements Serializable

Serialized Fields

chromosome

chromosome_id

chromosome_Identifier

cM

bpStart

bpEnd

seq

symbol

orientation

orientation_label

control

Class org.molgenis.omx.xgap.Marker extends ObservationTarget implements Serializable

Serialized Fields

chromosome

chromosome_id

chromosome_Identifier

cM

bpStart

bpEnd

seq

symbol

reportsFor

reportsFor_id

reportsFor_Identifier

reportsForMarkerCollection

Class org.molgenis.omx.xgap.Marker_ReportsFor extends AbstractEntity implements Serializable

Serialized Fields

autoid

reportsFor

reportsFor_id

reportsFor_Identifier

marker

marker_id

marker_Identifier

Class org.molgenis.omx.xgap.MassPeak extends ObservationTarget implements Serializable

Serialized Fields

mZ

retentionTime

Class org.molgenis.omx.xgap.Metabolite extends ObservationTarget implements Serializable

Serialized Fields

formula

mass