Constant Field Values

Contents

• org.molgenis.*

org.molgenis.*

org.molgenis.omx.das.impl.DasURLFilter

Modifier and Type	Constant Field	Value
public static final String	DATASET_PREFIX	"dasdataset_"

org.molgenis.omx.patient.Patient

Modifier and Type	Constant Field	Value
public static final String	ALLELE1	"Allele1"
public static final String	ALLELE2	"Allele2"
public static final String	ENTITY_NAME	"Patient"
public static final String	ID	"id"
public static final String	PHENO	"Pheno"
public static final String	PUBMEDID	"PubMedID"
public static final String	REFERENCE	"Reference"

org.molgenis.omx.xgap.Chromosome

Modifier and Type	Constant Field	Value
public static final String	BPLENGTH	"bpLength"
public static final String	ENTITY_NAME	"Chromosome"
public static final String	ID	"id"
public static final String	ISAUTOSOMAL	"isAutosomal"
public static final String	ORDERNR	"orderNr"
public static final String	SPECIES	"Species"

org.molgenis.omx.xgap.Clone

Modifier and Type	Constant Field	Value
public static final String	BPEND	"bpEnd"
public static final String	BPSTART	"bpStart"
public static final String	CHROMOSOME	"Chromosome"
public static final String	CM	"cM"
public static final String	ENTITY_NAME	"Clone"
public static final String	ID	"id"
public static final String	SEQ	"Seq"
public static final String	SYMBOL	"Symbol"

org.molgenis.omx.xgap.DerivedTrait

Modifier and Type	Constant Field	Value
public static final String	ENTITY_NAME	"DerivedTrait"
public static final String	ID	"id"

org.molgenis.omx.xgap.EnvironmentalFactor

Modifier and Type	Constant Field	Value
public static final String	ENTITY_NAME	"EnvironmentalFactor"
public static final String	ID	"id"

org.molgenis.omx.xgap.Gene

Modifier and Type	Constant Field	Value
public static final String	BPEND	"bpEnd"
public static final String	BPSTART	"bpStart"
public static final String	CHROMOSOME	"Chromosome"
public static final String	CM	"cM"
public static final String	CONTROL	"Control"
public static final String	ENTITY_NAME	"Gene"
public static final String	ID	"id"
public static final String	ORIENTATION	"Orientation"
public static final String	SEQ	"Seq"
public static final String	SYMBOL	"Symbol"

org.molgenis.omx.xgap.Marker

Modifier and Type	Constant Field	Value
public static final String	BPEND	"bpEnd"
public static final String	BPSTART	"bpStart"
public static final String	CHROMOSOME	"Chromosome"
public static final String	CM	"cM"
public static final String	ENTITY_NAME	"Marker"
public static final String	ID	"id"
public static final String	REPORTSFOR	"ReportsFor"
public static final String	SEQ	"Seq"
public static final String	SYMBOL	"Symbol"

org.molgenis.omx.xgap.Marker_ReportsFor

Modifier and Type	Constant Field	Value
public static final String	AUTOID	"autoid"
public static final String	ENTITY_NAME	"Marker_ReportsFor"
public static final String	MARKER	"Marker"
public static final String	REPORTSFOR	"ReportsFor"

org.molgenis.omx.xgap.MassPeak

Modifier and Type	Constant Field	Value
public static final String	ENTITY_NAME	"MassPeak"
public static final String	ID	"id"
public static final String	MZ	"MZ"
public static final String	RETENTIONTIME	"RetentionTime"

org.molgenis.omx.xgap.Metabolite

Modifier and Type	Constant Field	Value
public static final String	ENTITY_NAME	"Metabolite"
public static final String	FORMULA	"Formula"
public static final String	ID	"id"
public static final String	MASS	"Mass"
public static final String	STRUCTURE	"Structure"

org.molgenis.omx.xgap.NMRBin

Modifier and Type	Constant Field	Value
public static final String	ENTITY_NAME	"NMRBin"
public static final String	ID	"id"

org.molgenis.omx.xgap.PairedSample

Modifier and Type	Constant Field	Value
public static final String	ENTITY_NAME	"PairedSample"
public static final String	ID	"id"
public static final String	LABEL1	"Label1"
public static final String	LABEL2	"Label2"
public static final String	SUBJECT1	"Subject1"
public static final String	SUBJECT2	"Subject2"

org.molgenis.omx.xgap.Polymorphism

Modifier and Type	Constant Field	Value
public static final String	BASE	"Base"
public static final String	ENTITY_NAME	"Polymorphism"
public static final String	ID	"id"
public static final String	VALUE	"Value"

org.molgenis.omx.xgap.Probe

Modifier and Type	Constant Field	Value
public static final String	BPEND	"bpEnd"
public static final String	BPSTART	"bpStart"
public static final String	CHROMOSOME	"Chromosome"
public static final String	CM	"cM"
public static final String	ENTITY_NAME	"Probe"
public static final String	ID	"id"
public static final String	MISMATCH	"Mismatch"
public static final String	PROBESET	"ProbeSet"
public static final String	REPORTSFOR	"ReportsFor"
public static final String	SEQ	"Seq"
public static final String	SYMBOL	"Symbol"

org.molgenis.omx.xgap.ProbeSet

Modifier and Type	Constant Field	Value
public static final String	BPEND	"bpEnd"
public static final String	BPSTART	"bpStart"
public static final String	CHROMOSOME	"Chromosome"
public static final String	CM	"cM"
public static final String	ENTITY_NAME	"ProbeSet"
public static final String	ID	"id"
public static final String	SEQ	"Seq"
public static final String	SYMBOL	"Symbol"

org.molgenis.omx.xgap.Protein

Modifier and Type	Constant Field	Value
public static final String	AMINOSEQUENCE	"AminoSequence"
public static final String	ENTITY_NAME	"Protein"
public static final String	GENE	"Gene"
public static final String	ID	"id"
public static final String	MASS	"Mass"
public static final String	TRANSCRIPT	"Transcript"

org.molgenis.omx.xgap.Sample

Modifier and Type	Constant Field	Value
public static final String	ENTITY_NAME	"Sample"
public static final String	ID	"id"
public static final String	INDIVIDUAL	"Individual"
public static final String	TISSUE	"Tissue"

org.molgenis.omx.xgap.SNP

Modifier and Type	Constant Field	Value
public static final String	ENTITY_NAME	"SNP"
public static final String	ID	"id"
public static final String	POLYMORPHISM	"Polymorphism"
public static final String	STATUS	"Status"

org.molgenis.omx.xgap.SNP_Polymorphism

Modifier and Type	Constant Field	Value
public static final String	AUTOID	"autoid"
public static final String	ENTITY_NAME	"SNP_Polymorphism"
public static final String	POLYMORPHISM	"Polymorphism"
public static final String	SNP	"SNP"

org.molgenis.omx.xgap.Spot

Modifier and Type	Constant Field	Value
public static final String	ENTITY_NAME	"Spot"
public static final String	GRIDX	"GridX"
public static final String	GRIDY	"GridY"
public static final String	ID	"id"
public static final String	X	"x"
public static final String	Y	"y"

org.molgenis.omx.xgap.Track

Modifier and Type	Constant Field	Value
public static final String	ENTITY_NAME	"Track"
public static final String	ID	"id"

org.molgenis.omx.xgap.Transcript

Modifier and Type	Constant Field	Value
public static final String	ENTITY_NAME	"Transcript"
public static final String	GENE	"Gene"
public static final String	ID	"id"

org.molgenis.omx.xgap.Variant

Modifier and Type	Constant Field	Value
public static final String	AANOTATION	"AaNotation"
public static final String	AAPOSITION	"AaPosition"
public static final String	BPEND	"bpEnd"
public static final String	BPSTART	"bpStart"
public static final String	CDNANOTATION	"CdnaNotation"
public static final String	CDNAPOSITION	"CdnaPosition"
public static final String	CHROMOSOME	"Chromosome"
public static final String	CM	"cM"
public static final String	CODONCHANGE	"Codonchange"
public static final String	CONSEQUENCE	"Consequence"
public static final String	DETAILSFORMUTATION	"DetailsForMutation"
public static final String	EFFECTONSPLICING	"EffectOnSplicing"
public static final String	ENTITY_NAME	"Variant"
public static final String	EVENT	"Event"
public static final String	EXON	"Exon"
public static final String	GDNANOTATION	"GdnaNotation"
public static final String	GENE	"Gene"
public static final String	ID	"id"
public static final String	IDMUTATION	"IdMutation"
public static final String	INHERITANCE	"Inheritance"
public static final String	MUTATIONPOSITION	"MutationPosition"
public static final String	NTCHANGE	"NtChange"
public static final String	PATHOGENICITY	"Pathogenicity"
public static final String	REPORTEDSNP	"ReportedSNP"
public static final String	SEQ	"Seq"
public static final String	SYMBOL	"Symbol"
public static final String	TRACK	"Track"
public static final String	VARIANTLENGTH	"VariantLength"