org.molgenis.omx.patient

Class Patient

java.lang.Object

org.molgenis.data.support.AbstractEntity

org.molgenis.omx.observ.Characteristic

org.molgenis.omx.observ.ObservationTarget

org.molgenis.omx.observ.target.Individual

org.molgenis.omx.patient.Patient

All Implemented Interfaces:

Serializable, Entity, Autoid, Identifiable

@Entity
public class Patient
extends Individual
implements Entity

Patient: .

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	ALLELE1
static String	ALLELE2
static String	ENTITY_NAME
static String	ID
static String	PHENO
static String	PUBMEDID
static String	REFERENCE

Fields inherited from class org.molgenis.omx.observ.target.Individual

FATHER, MOTHER

Fields inherited from class org.molgenis.omx.observ.Characteristic

__TYPE, DESCRIPTION, IDENTIFIER, NAME

Constructor Summary

Constructors

Constructor and Description
Patient()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object obj)
Object	get(String name) Generic getter.
Variant	getAllele1() Get the .
Variant	getAllele2() Get the .
Iterable<String>	getAttributeNames()
EntityMetaData	getEntityMetaData()
String	getEntityName()
Integer	getIdValue()
List<String>	getLabelAttributeNames()
String	getPheno() Get the .
String	getPubMedID() Get the .
String	getReference() Get the .
int	hashCode()
void	set(Entity entity, boolean strict)
void	set(String attributeName, Object value)
void	setAllele1(Variant allele1) Set the .
void	setAllele2(Variant allele2) Set the .
void	setPheno(String pheno) Set the .
void	setPubMedID(String pubMedID) Set the .
void	setReference(String reference) Set the .
String	toString()
String	toString(boolean verbose)

Methods inherited from class org.molgenis.omx.observ.target.Individual

getFather, getIndividualsPanelCollection, getMother, setFather, setIndividualsPanelCollection, setMother

Methods inherited from class org.molgenis.omx.observ.Characteristic

get__Type, get__TypeLabel, get__TypeOptions, getDescription, getId, getIdentifier, getName, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollection

Methods inherited from class org.molgenis.data.support.AbstractEntity

getBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, isObjectRepresentation, set, setValuesFromString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.data.Entity

getBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, set

Field Detail

ENTITY_NAME

public static final String ENTITY_NAME

See Also:

Constant Field Values

ALLELE1

public static final String ALLELE1

See Also:

Constant Field Values

ALLELE2

public static final String ALLELE2

See Also:

Constant Field Values

PHENO

public static final String PHENO

See Also:

Constant Field Values

PUBMEDID

public static final String PUBMEDID

See Also:

Constant Field Values

REFERENCE

public static final String REFERENCE

See Also:

Constant Field Values

ID

public static final String ID

See Also:

Constant Field Values

Constructor Detail

Patient

public Patient()

Method Detail

getEntityName

public String getEntityName()

Overrides:

getEntityName in class Individual

getAllele1

public Variant getAllele1()

Get the .

Returns:

allele1.

setAllele1

public void setAllele1(Variant allele1)

Set the .

Parameters:

allele1 -

getAllele2

public Variant getAllele2()

Get the .

Returns:

allele2.

setAllele2

public void setAllele2(Variant allele2)

Set the .

Parameters:

allele2 -

getPheno

public String getPheno()

Get the .

Returns:

pheno.

setPheno

public void setPheno(String pheno)

Set the .

Parameters:

pheno -

getPubMedID

public String getPubMedID()

Get the .

Returns:

pubMedID.

setPubMedID

public void setPubMedID(String pubMedID)

Set the .

Parameters:

pubMedID -

getReference

public String getReference()

Get the .

Returns:

reference.

setReference

public void setReference(String reference)

Set the .

Parameters:

reference -

get

public Object get(String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

Overrides:

get in class Individual

set

public void set(Entity entity,
       boolean strict)

Specified by:

set in interface Entity

Overrides:

set in class Individual

toString

public String toString()

Overrides:

toString in class Individual

toString

public String toString(boolean verbose)

Overrides:

toString in class Individual

getIdValue

public Integer getIdValue()

Specified by:

getIdValue in interface Entity

Overrides:

getIdValue in class Individual

getAttributeNames

public Iterable<String> getAttributeNames()

Specified by:

getAttributeNames in interface Entity

Overrides:

getAttributeNames in class Individual

getLabelAttributeNames

public List<String> getLabelAttributeNames()

Specified by:

getLabelAttributeNames in interface Entity

Overrides:

getLabelAttributeNames in class Individual

set

public void set(String attributeName,
       Object value)

Specified by:

set in interface Entity

Overrides:

set in class Individual

equals

public boolean equals(Object obj)

Overrides:

equals in class Individual

hashCode

public int hashCode()

Overrides:

hashCode in class Individual

getEntityMetaData

public EntityMetaData getEntityMetaData()

Specified by:

getEntityMetaData in interface Entity

Overrides:

getEntityMetaData in class Individual