org.molgenis.omx.xgap

Class Chromosome

java.lang.Object

org.molgenis.data.support.AbstractEntity

org.molgenis.omx.observ.Characteristic

org.molgenis.omx.observ.ObservationTarget

org.molgenis.omx.xgap.Chromosome

All Implemented Interfaces:

Serializable, Entity, Autoid, Identifiable

@Entity
public class Chromosome
extends ObservationTarget
implements Entity

Chromosome: .

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	BPLENGTH
static String	ENTITY_NAME
static String	ID
static String	ISAUTOSOMAL
static String	ORDERNR
static String	SPECIES

Fields inherited from class org.molgenis.omx.observ.Characteristic

__TYPE, DESCRIPTION, IDENTIFIER, NAME

Constructor Summary

Constructors

Constructor and Description
Chromosome()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object obj)
Object	get(String name) Generic getter.
Iterable<String>	getAttributeNames()
Integer	getBpLength() Get the Lenght of the chromsome in base pairs..
EntityMetaData	getEntityMetaData()
String	getEntityName()
Integer	getIdValue()
Boolean	getIsAutosomal() Get the Is 'yes' when number of chromosomes is equal in male and female individuals, i.e., if not a sex chromosome..
List<String>	getLabelAttributeNames()
Integer	getOrderNr() Get the .
OntologyTerm	getSpecies() Get the Reference to the species this chromosome belongs to..
int	hashCode()
void	set(Entity entity, boolean strict)
void	set(String attributeName, Object value)
void	setBpLength(Integer bpLength) Set the Lenght of the chromsome in base pairs..
void	setIsAutosomal(Boolean isAutosomal) Set the Is 'yes' when number of chromosomes is equal in male and female individuals, i.e., if not a sex chromosome..
void	setOrderNr(Integer orderNr) Set the .
void	setSpecies(OntologyTerm species) Set the Reference to the species this chromosome belongs to..
String	toString()
String	toString(boolean verbose)

Methods inherited from class org.molgenis.omx.observ.Characteristic

get__Type, get__TypeLabel, get__TypeOptions, getDescription, getId, getIdentifier, getName, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollection

Methods inherited from class org.molgenis.data.support.AbstractEntity

getBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, isObjectRepresentation, set, setValuesFromString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.data.Entity

getBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, set

Field Detail

ENTITY_NAME

public static final String ENTITY_NAME

See Also:

Constant Field Values

ORDERNR

public static final String ORDERNR

See Also:

Constant Field Values

ISAUTOSOMAL

public static final String ISAUTOSOMAL

See Also:

Constant Field Values

BPLENGTH

public static final String BPLENGTH

See Also:

Constant Field Values

SPECIES

public static final String SPECIES

See Also:

Constant Field Values

ID

public static final String ID

See Also:

Constant Field Values

Constructor Detail

Chromosome

public Chromosome()

Method Detail

getEntityName

public String getEntityName()

Overrides:

getEntityName in class ObservationTarget

getOrderNr

public Integer getOrderNr()

Get the .

Returns:

orderNr.

setOrderNr

public void setOrderNr(Integer orderNr)

Set the .

Parameters:

orderNr -

getIsAutosomal

public Boolean getIsAutosomal()

Get the Is 'yes' when number of chromosomes is equal in male and female individuals, i.e., if not a sex chromosome..

Returns:

isAutosomal.

setIsAutosomal

public void setIsAutosomal(Boolean isAutosomal)

Set the Is 'yes' when number of chromosomes is equal in male and female individuals, i.e., if not a sex chromosome..

Parameters:

isAutosomal -

getBpLength

public Integer getBpLength()

Get the Lenght of the chromsome in base pairs..

Returns:

bpLength.

setBpLength

public void setBpLength(Integer bpLength)

Set the Lenght of the chromsome in base pairs..

Parameters:

bpLength -

getSpecies

public OntologyTerm getSpecies()

Get the Reference to the species this chromosome belongs to..

Returns:

species.

setSpecies

public void setSpecies(OntologyTerm species)

Set the Reference to the species this chromosome belongs to..

Parameters:

species -

get

public Object get(String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

Overrides:

get in class ObservationTarget

set

public void set(Entity entity,
       boolean strict)

Specified by:

set in interface Entity

Overrides:

set in class ObservationTarget

toString

public String toString()

Overrides:

toString in class ObservationTarget

toString

public String toString(boolean verbose)

Overrides:

toString in class ObservationTarget

getIdValue

public Integer getIdValue()

Specified by:

getIdValue in interface Entity

Overrides:

getIdValue in class ObservationTarget

getAttributeNames

public Iterable<String> getAttributeNames()

Specified by:

getAttributeNames in interface Entity

Overrides:

getAttributeNames in class ObservationTarget

getLabelAttributeNames

public List<String> getLabelAttributeNames()

Specified by:

getLabelAttributeNames in interface Entity

Overrides:

getLabelAttributeNames in class ObservationTarget

set

public void set(String attributeName,
       Object value)

Specified by:

set in interface Entity

Overrides:

set in class ObservationTarget

equals

public boolean equals(Object obj)

Overrides:

equals in class ObservationTarget

hashCode

public int hashCode()

Overrides:

hashCode in class ObservationTarget

getEntityMetaData

public EntityMetaData getEntityMetaData()

Specified by:

getEntityMetaData in interface Entity

Overrides:

getEntityMetaData in class ObservationTarget