@Entity public class Marker extends ObservationTarget implements Entity, Locus
| Modifier and Type | Field and Description |
|---|---|
static String |
BPEND |
static String |
BPSTART |
static String |
CHROMOSOME |
static String |
CM |
static String |
ENTITY_NAME |
static String |
ID |
static String |
REPORTSFOR |
static String |
SEQ |
static String |
SYMBOL |
__TYPE, DESCRIPTION, IDENTIFIER, NAME| Constructor and Description |
|---|
Marker() |
| Modifier and Type | Method and Description |
|---|---|
boolean |
equals(Object obj) |
Object |
get(String name)
Generic getter.
|
Iterable<String> |
getAttributeNames() |
Long |
getBpEnd()
Get the numeric basepair postion (3') on the chromosome.
|
Long |
getBpStart()
Get the numeric basepair postion (5') on the chromosome.
|
Chromosome |
getChromosome()
Get the Reference to the chromosome this position belongs to..
|
Double |
getCM()
Get the genetic map position in centi morgan (cM)..
|
EntityMetaData |
getEntityMetaData() |
String |
getEntityName() |
Integer |
getIdValue() |
List<String> |
getLabelAttributeNames() |
List<Marker> |
getReportsFor()
Get the The marker (or a subclass like 'SNP') this marker (or a subclass like 'SNP') reports for..
|
Collection<Marker> |
getReportsForMarkerCollection() |
String |
getSeq()
Get the The FASTA text representation of the sequence..
|
String |
getSymbol()
Get the todo.
|
int |
hashCode() |
void |
set(Entity entity,
boolean strict) |
void |
set(String attributeName,
Object value) |
void |
setBpEnd(Long bpEnd)
Set the numeric basepair postion (3') on the chromosome.
|
void |
setBpStart(Long bpStart)
Set the numeric basepair postion (5') on the chromosome.
|
void |
setChromosome(Chromosome chromosome)
Set the Reference to the chromosome this position belongs to..
|
void |
setCM(Double cM)
Set the genetic map position in centi morgan (cM)..
|
void |
setReportsFor(List<Marker> reportsFor)
Set the The marker (or a subclass like 'SNP') this marker (or a subclass like 'SNP') reports for..
|
void |
setReportsForMarkerCollection(Collection<Marker> collection) |
void |
setSeq(String seq)
Set the The FASTA text representation of the sequence..
|
void |
setSymbol(String symbol)
Set the todo.
|
String |
toString() |
String |
toString(boolean verbose) |
get__Type, get__TypeLabel, get__TypeOptions, getDescription, getId, getIdentifier, getName, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollectiongetBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, isObjectRepresentation, set, setValuesFromStringclone, finalize, getClass, notify, notifyAll, wait, wait, waitgetBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, setpublic static final String ENTITY_NAME
public static final String CHROMOSOME
public static final String CM
public static final String BPSTART
public static final String BPEND
public static final String SEQ
public static final String SYMBOL
public static final String REPORTSFOR
public static final String ID
public String getEntityName()
getEntityName in class ObservationTargetpublic Chromosome getChromosome()
getChromosome in interface Locuspublic void setChromosome(Chromosome chromosome)
setChromosome in interface Locuschromosome - public Double getCM()
public void setCM(Double cM)
public Long getBpStart()
getBpStart in interface Locuspublic void setBpStart(Long bpStart)
setBpStart in interface LocusbpStart - public Long getBpEnd()
public void setBpEnd(Long bpEnd)
public String getSeq()
public void setSeq(String seq)
public String getSymbol()
public void setSymbol(String symbol)
public List<Marker> getReportsFor()
public void setReportsFor(List<Marker> reportsFor)
reportsFor - public Object get(String name)
get in interface Entityget in class ObservationTargetpublic void set(Entity entity, boolean strict)
set in interface Entityset in class ObservationTargetpublic String toString()
toString in class ObservationTargetpublic String toString(boolean verbose)
toString in class ObservationTargetpublic Integer getIdValue()
getIdValue in interface EntitygetIdValue in class ObservationTargetpublic Collection<Marker> getReportsForMarkerCollection()
public void setReportsForMarkerCollection(Collection<Marker> collection)
public Iterable<String> getAttributeNames()
getAttributeNames in interface EntitygetAttributeNames in class ObservationTargetpublic List<String> getLabelAttributeNames()
getLabelAttributeNames in interface EntitygetLabelAttributeNames in class ObservationTargetpublic void set(String attributeName, Object value)
set in interface Entityset in class ObservationTargetpublic boolean equals(Object obj)
equals in class ObservationTargetpublic int hashCode()
hashCode in class ObservationTargetpublic EntityMetaData getEntityMetaData()
getEntityMetaData in interface EntitygetEntityMetaData in class ObservationTargetCopyright © 2014. All Rights Reserved.