org.molgenis.omx.xgap

Class Polymorphism

java.lang.Object

org.molgenis.data.support.AbstractEntity

org.molgenis.omx.observ.Characteristic

org.molgenis.omx.observ.ObservationTarget

org.molgenis.omx.xgap.Polymorphism

All Implemented Interfaces:

Serializable, Entity, Autoid, Identifiable

@Entity
public class Polymorphism
extends ObservationTarget
implements Entity

Polymorphism: The difference of a single base discovered between two sequenced individuals..

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	BASE
static String	ENTITY_NAME
static String	ID
static String	VALUE

Fields inherited from class org.molgenis.omx.observ.Characteristic

__TYPE, DESCRIPTION, IDENTIFIER, NAME

Constructor Summary

Constructors

Constructor and Description
Polymorphism()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object obj)
Object	get(String name) Generic getter.
Iterable<String>	getAttributeNames()
String	getBase() Get the The affected DNA base.
String	getBaseLabel() Get tha label for enum Base.
List<ValueLabel>	getBaseOptions() Base is enum.
EntityMetaData	getEntityMetaData()
String	getEntityName()
Integer	getIdValue()
List<String>	getLabelAttributeNames()
Collection<SNP>	getPolymorphismSNPCollection()
String	getValue() Get the The strain/genotype for which this polymorphism was discovered.
int	hashCode()
void	set(Entity entity, boolean strict)
void	set(String attributeName, Object value)
void	setBase(String base) Set the The affected DNA base.
void	setPolymorphismSNPCollection(Collection<SNP> collection)
void	setValue(String value) Set the The strain/genotype for which this polymorphism was discovered.
String	toString()
String	toString(boolean verbose)

Methods inherited from class org.molgenis.omx.observ.Characteristic

get__Type, get__TypeLabel, get__TypeOptions, getDescription, getId, getIdentifier, getName, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollection

Methods inherited from class org.molgenis.data.support.AbstractEntity

getBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, isObjectRepresentation, set, setValuesFromString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.data.Entity

getBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, set

Field Detail

ENTITY_NAME

public static final String ENTITY_NAME

See Also:

Constant Field Values

BASE

public static final String BASE

See Also:

Constant Field Values

VALUE

public static final String VALUE

See Also:

Constant Field Values

ID

public static final String ID

See Also:

Constant Field Values

Constructor Detail

Polymorphism

public Polymorphism()

Method Detail

getEntityName

public String getEntityName()

Overrides:

getEntityName in class ObservationTarget

getBase

public String getBase()

Get the The affected DNA base. Note that you can select the reference base here..

Returns:

base.

setBase

public void setBase(String base)

Set the The affected DNA base. Note that you can select the reference base here..

Parameters:

base -

getBaseLabel

public String getBaseLabel()

Get tha label for enum Base.

getBaseOptions

public List<ValueLabel> getBaseOptions()

Base is enum. This method returns all available enum options.

getValue

public String getValue()

Get the The strain/genotype for which this polymorphism was discovered. E.g. 'N2' or 'CB4856'..

Returns:

value.

setValue

public void setValue(String value)

Set the The strain/genotype for which this polymorphism was discovered. E.g. 'N2' or 'CB4856'..

Parameters:

value -

get

public Object get(String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

Overrides:

get in class ObservationTarget

set

public void set(Entity entity,
       boolean strict)

Specified by:

set in interface Entity

Overrides:

set in class ObservationTarget

toString

public String toString()

Overrides:

toString in class ObservationTarget

toString

public String toString(boolean verbose)

Overrides:

toString in class ObservationTarget

getIdValue

public Integer getIdValue()

Specified by:

getIdValue in interface Entity

Overrides:

getIdValue in class ObservationTarget

getPolymorphismSNPCollection

public Collection<SNP> getPolymorphismSNPCollection()

setPolymorphismSNPCollection

public void setPolymorphismSNPCollection(Collection<SNP> collection)

getAttributeNames

public Iterable<String> getAttributeNames()

Specified by:

getAttributeNames in interface Entity

Overrides:

getAttributeNames in class ObservationTarget

getLabelAttributeNames

public List<String> getLabelAttributeNames()

Specified by:

getLabelAttributeNames in interface Entity

Overrides:

getLabelAttributeNames in class ObservationTarget

set

public void set(String attributeName,
       Object value)

Specified by:

set in interface Entity

Overrides:

set in class ObservationTarget

equals

public boolean equals(Object obj)

Overrides:

equals in class ObservationTarget

hashCode

public int hashCode()

Overrides:

hashCode in class ObservationTarget

getEntityMetaData

public EntityMetaData getEntityMetaData()

Specified by:

getEntityMetaData in interface Entity

Overrides:

getEntityMetaData in class ObservationTarget