org.molgenis.omx.xgap

Class Protein

java.lang.Object

org.molgenis.data.support.AbstractEntity

org.molgenis.omx.observ.Characteristic

org.molgenis.omx.observ.ObservationTarget

org.molgenis.omx.xgap.Protein

All Implemented Interfaces:

Serializable, Entity, Autoid, Identifiable

@Entity
public class Protein
extends ObservationTarget
implements Entity

Protein: Trait annotations specific for proteins..

Author:

MOLGENIS generator

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	AMINOSEQUENCE
static String	ENTITY_NAME
static String	GENE
static String	ID
static String	MASS
static String	TRANSCRIPT

Fields inherited from class org.molgenis.omx.observ.Characteristic

__TYPE, DESCRIPTION, IDENTIFIER, NAME

Constructor Summary

Constructors

Constructor and Description
Protein()

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object obj)
Object	get(String name) Generic getter.
String	getAminoSequence() Get the The aminoacid sequence..
Iterable<String>	getAttributeNames()
EntityMetaData	getEntityMetaData()
String	getEntityName()
Gene	getGene() Get the The gene that produces this protein.
Integer	getIdValue()
List<String>	getLabelAttributeNames()
Double	getMass() Get the The mass of this metabolite.
Transcript	getTranscript() Get the The transcript variant that produces this protein.
int	hashCode()
void	set(Entity entity, boolean strict)
void	set(String attributeName, Object value)
void	setAminoSequence(String aminoSequence) Set the The aminoacid sequence..
void	setGene(Gene gene) Set the The gene that produces this protein.
void	setMass(Double mass) Set the The mass of this metabolite.
void	setTranscript(Transcript transcript) Set the The transcript variant that produces this protein.
String	toString()
String	toString(boolean verbose)

Methods inherited from class org.molgenis.omx.observ.Characteristic

get__Type, get__TypeLabel, get__TypeOptions, getDescription, getId, getIdentifier, getName, getValueMrefValueCollection, set__Type, setDescription, setId, setIdentifier, setName, setValueMrefValueCollection

Methods inherited from class org.molgenis.data.support.AbstractEntity

getBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, isObjectRepresentation, set, setValuesFromString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.molgenis.data.Entity

getBoolean, getDate, getDouble, getEntities, getEntity, getInt, getIntList, getLabelValue, getList, getLong, getString, getTimestamp, getUtilDate, set

Field Detail

ENTITY_NAME

public static final String ENTITY_NAME

See Also:

Constant Field Values

GENE

public static final String GENE

See Also:

Constant Field Values

TRANSCRIPT

public static final String TRANSCRIPT

See Also:

Constant Field Values

AMINOSEQUENCE

public static final String AMINOSEQUENCE

See Also:

Constant Field Values

MASS

public static final String MASS

See Also:

Constant Field Values

ID

public static final String ID

See Also:

Constant Field Values

Constructor Detail

Protein

public Protein()

Method Detail

getEntityName

public String getEntityName()

Overrides:

getEntityName in class ObservationTarget

getGene

public Gene getGene()

Get the The gene that produces this protein.

Returns:

gene.

setGene

public void setGene(Gene gene)

Set the The gene that produces this protein.

Parameters:

gene -

getTranscript

public Transcript getTranscript()

Get the The transcript variant that produces this protein.

Returns:

transcript.

setTranscript

public void setTranscript(Transcript transcript)

Set the The transcript variant that produces this protein.

Parameters:

transcript -

getAminoSequence

public String getAminoSequence()

Get the The aminoacid sequence..

Returns:

aminoSequence.

setAminoSequence

public void setAminoSequence(String aminoSequence)

Set the The aminoacid sequence..

Parameters:

aminoSequence -

getMass

public Double getMass()

Get the The mass of this metabolite.

Returns:

mass.

setMass

public void setMass(Double mass)

Set the The mass of this metabolite.

Parameters:

mass -

get

public Object get(String name)

Generic getter. Get the property by using the name.

Specified by:

get in interface Entity

Overrides:

get in class ObservationTarget

set

public void set(Entity entity,
       boolean strict)

Specified by:

set in interface Entity

Overrides:

set in class ObservationTarget

toString

public String toString()

Overrides:

toString in class ObservationTarget

toString

public String toString(boolean verbose)

Overrides:

toString in class ObservationTarget

getIdValue

public Integer getIdValue()

Specified by:

getIdValue in interface Entity

Overrides:

getIdValue in class ObservationTarget

getAttributeNames

public Iterable<String> getAttributeNames()

Specified by:

getAttributeNames in interface Entity

Overrides:

getAttributeNames in class ObservationTarget

getLabelAttributeNames

public List<String> getLabelAttributeNames()

Specified by:

getLabelAttributeNames in interface Entity

Overrides:

getLabelAttributeNames in class ObservationTarget

set

public void set(String attributeName,
       Object value)

Specified by:

set in interface Entity

Overrides:

set in class ObservationTarget

equals

public boolean equals(Object obj)

Overrides:

equals in class ObservationTarget

hashCode

public int hashCode()

Overrides:

hashCode in class ObservationTarget

getEntityMetaData

public EntityMetaData getEntityMetaData()

Specified by:

getEntityMetaData in interface Entity

Overrides:

getEntityMetaData in class ObservationTarget